CN192259

Overview
NameCN192259
Unique NameCN192259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = -2
Query:  344 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRY 706
            REGDPV  M+FI+RG++    +     G + +  L  G F G+ELL+W L       LP S+ T   +  +EAF L A +L+++   FR +  +++L+ T RYYS  W+TWAA  IQ AWRRY
Sbjct:  515 REGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFR-RLHSKQLRHTFRYYSQQWKTWAACFIQAAWRRY 636          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = -2
Query:  335 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 706
            REGDPV  M+FI+RG+++   +     G   +  L PG F G+ELL+W L       LP S+ T   +  +EAF L A++L+++ + FR +  +++L+   RYYS  WR W    IQ AWRRY  R
Sbjct:  486 REGDPVNEMLFIIRGQMESSTTDGGRSGFFNSITLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKFVANQFR-RLHSKKLQHAFRYYSHQWRAWGTCFIQAAWRRYMKR 610          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20
Identity = 51/126 (40.48%), Postives = 76/126 (60.32%), Query Frame = -2
Query:  335 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 706
            REGDPV  M+FI+RG +    +     G   + ++ PG F G+ELL+W L    +  LP+S+ T   +  +EAF L A++L+++   FR +   ++L+   R+YS  WRTWAA  IQ AWRR+R R
Sbjct:  500 REGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCLIGPGDFCGEELLTWALDPRPVVILPSSTRTVKAICEVEAFALKAEDLQFVASQFR-RLHTKQLRHKFRFYSHQWRTWAACFIQAAWRRHRKR 624          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = -2
Query:  245 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNESNRLMRYAAMFMSI 706
            REGDPV  M+F++RG++    +     G      L+P  F G++LL+W L        P S+ T   +  +EAF L A +L+ +   FR +  +++L+ T R+YS  WRTW A  IQ AWRR+  R     ++  E+   N   +  R AA   S+
Sbjct:  503 REGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLVASQFR-RLHSKQLQHTFRFYSVQWRTWGASFIQAAWRRHCRRKLARSLTEEEDRFRNAITKRERNAASSSSL 657          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 47/126 (37.30%), Postives = 69/126 (54.76%), Query Frame = -2
Query:  335 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 706
            REGDPV  M+F++RGR+    +     G      L+   F G++LL W L        P S+ T   +  +EAF L A++L+ +   FR +  +++L+ T R+YS  WRTW+   IQ AWRRY  R
Sbjct:  502 REGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFR-RLHSKQLQHTFRFYSVQWRTWSVSFIQAAWRRYCRR 626          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 52/162 (32.10%), Postives = 82/162 (50.62%), Query Frame = -2
Query:  248 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTE-------NGEGNESNRLMRYAAMFMS 706
            REG+PV  M+FI+RG +    +     G   +  L  G F GD LL+W L  P   + P SS T   +  +E F L A +L+++   +R +  +++L+   R+YS  W+TWAA  IQ AW+R+  R     +   E         + +  N+L   AA++ S
Sbjct:  506 REGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLVAGDFCGD-LLTWALD-PLSSQFPISSRTVQALTEVEGFLLSADDLKFVATQYR-RLHSKQLRHMFRFYSVQWQTWAACFIQAAWKRHCRRKLSKALREEEGKLHNTLQNDDSGGNKLNLGAAIYAS 664          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = -2
Query:  335 REGDPVPRMVFIVRGRIKRCQSLSKGMVATSV--LEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 706
            REG PV  M+ + RG++K      +  V  +   L+ G   G+ L +         RLP S+ T + +  +E F L   ++++I  H    F  ++L+RT R YS  WR+WAA  IQ AWR++  R
Sbjct:  465 REGHPVEEMLIVTRGKLKSTTGSHEMGVRNNCCDLQDGDICGELLFNG-------SRLPTSTRTVMTLTEVEGFILLPDDIKFIASHLNV-FQRQKLQRTFRLYSQQWRSWAAFFIQAAWRKHCKR 582          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 43/126 (34.13%), Postives = 68/126 (53.97%), Query Frame = -2
Query:  335 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 706
            REG+PV  M+FI+RG +    +     G   +  L  G   GD LL+W L      + P SS T   +  +E F + A +L+++   +R +  +++L+   R+YS  W+TWAA  IQ AW+R+  R
Sbjct:  464 REGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLIAGDSCGD-LLTWALYS-LSSQFPISSRTVQALTEVEGFVISADDLKFVATQYR-RLHSKQLQHMFRFYSLQWQTWAACFIQAAWKRHCRR 586          
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 47/132 (35.61%), Postives = 67/132 (50.76%), Query Frame = -2
Query:  335 GDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFID------RLPA----SSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 700
            G  V +MVFIVRG +   +S+ +      + E G   G+ELL+WCL R  ++      R+P+    SS    C+ ++EAF L   +L  +T  F     + R++   RY S  WR  AA  IQ AWR  R R
Sbjct:  624 GGLVEKMVFIVRGEM---ESIGEDGSVLPLYE-GDVCGEELLTWCLERSSVNPDGTRIRMPSKGLLSSRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYDSPYWRLRAARQIQVAWRYRRRR 751          
The following BLAST results are available for this feature:
BLAST of CN192259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CNGC1_ARATH3.478e-2041.46Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNG16_ARATH5.933e-2039.68Probable cyclic nucleotide-gated ion channel 16 OS... [more]
CNG15_ARATH7.749e-2040.48Putative cyclic nucleotide-gated ion channel 15 OS... [more]
CNG13_ARATH1.909e-1833.97Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNG10_ARATH4.701e-1737.30Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNGC3_ARATH4.865e-1432.10Probable cyclic nucleotide-gated ion channel 3 OS=... [more]
CNG12_ARATH5.947e-1233.33Probable cyclic nucleotide-gated ion channel 12 OS... [more]
CNG11_ARATH1.014e-1134.13Cyclic nucleotide-gated ion channel 11 OS=Arabidop... [more]
CNG20_ARATH5.034e-1135.61Probable cyclic nucleotide-gated ion channel 20, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006J16_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192259 ID=CN192259; Name=CN192259; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTTTTTTTTGACTGAGAAATCTAGCTTGCTTTCTTATCATTC
ATCTGCTAGCAAAATCCTGAACTAGGAAAGAATTTCCCCCCCTTTTTCTT
TTATTTCAAATCCAATTGTCTAAATCGAGTGCAAGTTCGATGTTCCATGG
CTAAATTGCTACCCAAAGAAAAGAAAAGAAACTTTATTCATCAATGGAAG
AATTGCACGACACGGTGTGCTTATTCAAGGTGATCATGTGGTCTAATTGA
CATGAACATAGCAGCATATCTCATAAGTCTGTTGCTCTCATTGCCTTCTC
CATTTTCAGTTACAGAAATCACAGGACCTCTAGTCCTCATCCTGTATCTT
CTCCAAGCAAATTGAATATTCACAGCCGCCCATGTCCTCCAATTTGATGA
ATAATATCTCGCGGTTCTCTTCAGCCTTTCGTTGGCAAATTTGTACCGGA
AATGATCTGTGATGTATCGGAGATTCTTTGCATCTAACCCAAATGCTTCT
ATGGATTCCATACAAACAAATGTTGCTGATGATGCTGGCAGCCGATCGAT
AAACGGGCGGCGTAGGCACCAAGAAAGCAACTCATCACCCAGAAACCCTC
CTGGTTCAAGCACACTTGTTGCTACCATGCCTTTGCTTAGGCTTTGGCAA
CGTTTAATCCGTCCACGAACAATGAACACCATTCTTGGCACAGGATCCCC
TTCTCTG
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