CN192259
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20 Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = -2 Query: 344 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRY 706 REGDPV M+FI+RG++ + G + + L G F G+ELL+W L LP S+ T + +EAF L A +L+++ FR + +++L+ T RYYS W+TWAA IQ AWRRY Sbjct: 515 REGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFR-RLHSKQLRHTFRYYSQQWKTWAACFIQAAWRRY 636
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20 Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = -2 Query: 335 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 706 REGDPV M+FI+RG+++ + G + L PG F G+ELL+W L LP S+ T + +EAF L A++L+++ + FR + +++L+ RYYS WR W IQ AWRRY R Sbjct: 486 REGDPVNEMLFIIRGQMESSTTDGGRSGFFNSITLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKFVANQFR-RLHSKKLQHAFRYYSHQWRAWGTCFIQAAWRRYMKR 610
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20 Identity = 51/126 (40.48%), Postives = 76/126 (60.32%), Query Frame = -2 Query: 335 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 706 REGDPV M+FI+RG + + G + ++ PG F G+ELL+W L + LP+S+ T + +EAF L A++L+++ FR + ++L+ R+YS WRTWAA IQ AWRR+R R Sbjct: 500 REGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCLIGPGDFCGEELLTWALDPRPVVILPSSTRTVKAICEVEAFALKAEDLQFVASQFR-RLHTKQLRHKFRFYSHQWRTWAACFIQAAWRRHRKR 624
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18 Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = -2 Query: 245 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNESNRLMRYAAMFMSI 706 REGDPV M+F++RG++ + G L+P F G++LL+W L P S+ T + +EAF L A +L+ + FR + +++L+ T R+YS WRTW A IQ AWRR+ R ++ E+ N + R AA S+ Sbjct: 503 REGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLVASQFR-RLHSKQLQHTFRFYSVQWRTWGASFIQAAWRRHCRRKLARSLTEEEDRFRNAITKRERNAASSSSL 657
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17 Identity = 47/126 (37.30%), Postives = 69/126 (54.76%), Query Frame = -2 Query: 335 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 706 REGDPV M+F++RGR+ + G L+ F G++LL W L P S+ T + +EAF L A++L+ + FR + +++L+ T R+YS WRTW+ IQ AWRRY R Sbjct: 502 REGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFR-RLHSKQLQHTFRFYSVQWRTWSVSFIQAAWRRYCRR 626
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14 Identity = 52/162 (32.10%), Postives = 82/162 (50.62%), Query Frame = -2 Query: 248 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTE-------NGEGNESNRLMRYAAMFMS 706 REG+PV M+FI+RG + + G + L G F GD LL+W L P + P SS T + +E F L A +L+++ +R + +++L+ R+YS W+TWAA IQ AW+R+ R + E + + N+L AA++ S Sbjct: 506 REGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLVAGDFCGD-LLTWALD-PLSSQFPISSRTVQALTEVEGFLLSADDLKFVATQYR-RLHSKQLRHMFRFYSVQWQTWAACFIQAAWKRHCRRKLSKALREEEGKLHNTLQNDDSGGNKLNLGAAIYAS 664
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12 Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = -2 Query: 335 REGDPVPRMVFIVRGRIKRCQSLSKGMVATSV--LEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 706 REG PV M+ + RG++K + V + L+ G G+ L + RLP S+ T + + +E F L ++++I H F ++L+RT R YS WR+WAA IQ AWR++ R Sbjct: 465 REGHPVEEMLIVTRGKLKSTTGSHEMGVRNNCCDLQDGDICGELLFNG-------SRLPTSTRTVMTLTEVEGFILLPDDIKFIASHLNV-FQRQKLQRTFRLYSQQWRSWAAFFIQAAWRKHCKR 582
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11 Identity = 43/126 (34.13%), Postives = 68/126 (53.97%), Query Frame = -2 Query: 335 REGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 706 REG+PV M+FI+RG + + G + L G GD LL+W L + P SS T + +E F + A +L+++ +R + +++L+ R+YS W+TWAA IQ AW+R+ R Sbjct: 464 REGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLIAGDSCGD-LLTWALYS-LSSQFPISSRTVQALTEVEGFVISADDLKFVATQYR-RLHSKQLQHMFRFYSLQWQTWAACFIQAAWKRHCRR 586
BLAST of CN192259 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11 Identity = 47/132 (35.61%), Postives = 67/132 (50.76%), Query Frame = -2 Query: 335 GDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFID------RLPA----SSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 700 G V +MVFIVRG + +S+ + + E G G+ELL+WCL R ++ R+P+ SS C+ ++EAF L +L +T F + R++ RY S WR AA IQ AWR R R Sbjct: 624 GGLVEKMVFIVRGEM---ESIGEDGSVLPLYE-GDVCGEELLTWCLERSSVNPDGTRIRMPSKGLLSSRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYDSPYWRLRAARQIQVAWRYRRRR 751 The following BLAST results are available for this feature:
BLAST of CN192259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CN192259 ID=CN192259; Name=CN192259; organism=Citrus sinensis; type=EST; length=707bpback to top |