CN192246

Overview
NameCN192246
Unique NameCN192246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192246 vs. ExPASy Swiss-Prot
Match: CATA_CALJA (Catalase OS=Callithrix jacchus GN=CAT PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 3.644e-34
Identity = 71/152 (46.71%), Postives = 95/152 (62.50%), Query Frame = 3
Query:    6 FDDVGIPQDYRHMEGFGVQTFTLVNKNGKVHYVKFHWKPTCGVKCLIDDEEAVKVGGSNHSHATQDLYDSIAAGNYPEWKLYIQTIDPDHEDQFDFDPLDVTKWWPEDIIPLQPVGRLGVNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKM 461
            F D GIP  +RHM G+G  TF LVN NG+  Y KFH+K   G+K L   E+A ++   +  +  +DL+++IA GNYP W  YIQ +     + F F+P DVTK WP    PL PVG+L +N+N  N+FAE E +AF+P  + PGI  S DKM
Sbjct:  200 FSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNL-SVEDAARLSQEDPDYGLRDLFNAIATGNYPSWTFYIQVMTFSQAETFPFNPFDVTKIWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEASPDKM 350          
BLAST of CN192246 vs. ExPASy Swiss-Prot
Match: CATA_BOVIN (Catalase OS=Bos taurus GN=CAT PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 3.644e-34
Identity = 72/152 (47.37%), Postives = 96/152 (63.16%), Query Frame = 3
Query:    6 FDDVGIPQDYRHMEGFGVQTFTLVNKNGKVHYVKFHWKPTCGVKCLIDDEEAVKVGGSNHSHATQDLYDSIAAGNYPEWKLYIQTIDPDHEDQFDFDPLDVTKWWPEDIIPLQPVGRLGVNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKM 461
            F D GIP  +RHM G+G  TF LVN NG+  Y KFH+K   G+K L   E+A ++   +  +  +DL+++IA GNYP W LYIQ +     + F F+P D+TK WP    PL PVG+L +N+N  N+FAE E LAF+P  + PGI  S DKM
Sbjct:  200 FSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNL-SVEDAARLAHEDPDYGLRDLFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLTKVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDPSNMPPGIEPSPDKM 350          
BLAST of CN192246 vs. ExPASy Swiss-Prot
Match: CATA2_CAEEL (Catalase-2 OS=Caenorhabditis elegans GN=ctl-1 PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 3.644e-34
Identity = 68/152 (44.74%), Postives = 100/152 (65.79%), Query Frame = 3
Query:    6 FDDVGIPQDYRHMEGFGVQTFTLVNKNGKVHYVKFHWKPTCGVKCLIDDEEAVKVGGSNHSHATQDLYDSIAAGNYPEWKLYIQTIDPDHEDQFDFDPLDVTKWWPEDIIPLQPVGRLGVNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKM 461
            + D GIP  +R M G+G  TF +VNK G   Y KFH+KP  G K L D  +A K+  S+  +A +DL+++I + N+PEWK++IQ +  +  ++++F+P DVTK WP    PL  VG++ +N+N+ N+FAE E  AF P  +VPGI +S DKM
Sbjct:  196 YSDRGIPDGFRFMNGYGAHTFKMVNKEGNPIYCKFHFKPAQGSKNL-DPTDAGKLASSDPDYAIRDLFNAIESRNFPEWKMFIQVMTFEQAEKWEFNPFDVTKVWPHGDYPLIEVGKMVLNRNVKNYFAEVEQAAFCPAHIVPGIEFSPDKM 346          
BLAST of CN192246 vs. ExPASy Swiss-Prot
Match: CATA_RAT (Catalase OS=Rattus norvegicus GN=Cat PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.060e-33
Identity = 71/152 (46.71%), Postives = 96/152 (63.16%), Query Frame = 3
Query:    6 FDDVGIPQDYRHMEGFGVQTFTLVNKNGKVHYVKFHWKPTCGVKCLIDDEEAVKVGGSNHSHATQDLYDSIAAGNYPEWKLYIQTIDPDHEDQFDFDPLDVTKWWPEDIIPLQPVGRLGVNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKM 461
            F D GIP  +RHM G+G  TF LVN NG+  Y KFH+K   G+K L   EEA ++   +  +  +DL+++IA+GNYP W  YIQ +     + F F+P D+TK WP    PL PVG+L +N+N  N+FAE E +AF+P  + PGI  S DKM
Sbjct:  200 FSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNL-PVEEAGRLAQEDPDYGLRDLFNAIASGNYPSWTFYIQVMTFKEAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPANYFAEVEQMAFDPSNMPPGIEPSPDKM 350          
BLAST of CN192246 vs. ExPASy Swiss-Prot
Match: CATA_DEIRA (Catalase OS=Deinococcus radiodurans GN=katA PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.060e-33
Identity = 66/148 (44.59%), Postives = 98/148 (66.22%), Query Frame = 3
Query:   18 GIPQDYRHMEGFGVQTFTLVNKNGKVHYVKFHWKPTCGVKCLIDDEEAVKVGGSNHSHATQDLYDSIAAGNYPEWKLYIQTIDPDHEDQFDFDPLDVTKWWPEDIIPLQPVGRLGVNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKM 461
            GIP  YR M+G GV T+  VN  G+   VK+HW+P  GV+ L    +A +V  +N +HATQDL+D+I  G++P+W L++Q ++     + DFDPLD TK WP +  P + VG++ +N+N +N FAE E  AF  G++V G+ +S+DKM
Sbjct:  215 GIPASYRFMQGSGVNTYKWVNDQGEGVLVKYHWEPVQGVRNLTQ-MQADEVQATNFNHATQDLHDAIERGDFPQWDLFVQIMEDGEHPELDFDPLDDTKIWPREQFPWRHVGQMTLNRNPENVFAETEQAAFGTGVLVDGLDFSDDKM 361          
BLAST of CN192246 vs. ExPASy Swiss-Prot
Match: CATA_CAVPO (Catalase OS=Cavia porcellus GN=CAT PE=2 SV=4)

HSP 1 Score: 140.969 bits (354), Expect = 2.362e-33
Identity = 70/152 (46.05%), Postives = 95/152 (62.50%), Query Frame = 3
Query:    6 FDDVGIPQDYRHMEGFGVQTFTLVNKNGKVHYVKFHWKPTCGVKCLIDDEEAVKVGGSNHSHATQDLYDSIAAGNYPEWKLYIQTIDPDHEDQFDFDPLDVTKWWPEDIIPLQPVGRLGVNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKM 461
            F D GIP  +RHM G+G  TF LVN +G+  Y KFH+K   G+K L   E+A ++   +  +  +DL+++IA GNYP W LYIQ +       F F+P D+TK WP    PL PVG+L +N+N  N+FAE E +AF+P  + PGI  S DKM
Sbjct:  200 FSDRGIPDGHRHMNGYGSHTFKLVNGSGEAVYCKFHYKTDQGIKNL-SVEDAARLSQEDPDYGLRDLFNAIATGNYPSWTLYIQVMTFQQAQSFPFNPFDLTKIWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEPSPDKM 350          
BLAST of CN192246 vs. ExPASy Swiss-Prot
Match: CATA_HUMAN (Catalase OS=Homo sapiens GN=CAT PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 3.085e-33
Identity = 69/152 (45.39%), Postives = 95/152 (62.50%), Query Frame = 3
Query:    6 FDDVGIPQDYRHMEGFGVQTFTLVNKNGKVHYVKFHWKPTCGVKCLIDDEEAVKVGGSNHSHATQDLYDSIAAGNYPEWKLYIQTIDPDHEDQFDFDPLDVTKWWPEDIIPLQPVGRLGVNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKM 461
            F D GIP  +RHM G+G  TF LVN NG+  Y KFH+K   G+K L   E+A ++   +  +  +DL+++IA G YP W  YIQ +  +  + F F+P D+TK WP    PL PVG+L +N+N  N+FAE E +AF+P  + PGI  S DKM
Sbjct:  200 FSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNL-SVEDAARLSQEDPDYGIRDLFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMPPGIEASPDKM 350          
BLAST of CN192246 vs. ExPASy Swiss-Prot
Match: CATA_PIG (Catalase OS=Sus scrofa GN=CAT PE=1 SV=4)

HSP 1 Score: 140.198 bits (352), Expect = 4.029e-33
Identity = 69/152 (45.39%), Postives = 95/152 (62.50%), Query Frame = 3
Query:    6 FDDVGIPQDYRHMEGFGVQTFTLVNKNGKVHYVKFHWKPTCGVKCLIDDEEAVKVGGSNHSHATQDLYDSIAAGNYPEWKLYIQTIDPDHEDQFDFDPLDVTKWWPEDIIPLQPVGRLGVNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKM 461
            F D GIP  +RHM G+G  TF LVN+ G+  Y KFH+K   G+K L   E+A ++   +  +  +DL+++IA GNYP W  YIQ +     + F F+P D+TK WP    PL PVG+L +N+N  N+FAE E +AF+P  + PGI  S DKM
Sbjct:  200 FSDRGIPDGHRHMNGYGSHTFKLVNEKGEAVYCKFHYKTDQGIKNL-SVEDAARLPQEDPDYGIRDLFNAIATGNYPSWTFYIQVMTFQEAEAFPFNPFDLTKVWPHSEYPLIPVGKLVLNRNPVNYFAEVEQMAFDPSNMPPGIEPSPDKM 350          
BLAST of CN192246 vs. ExPASy Swiss-Prot
Match: CAT3_NEUCR (Catalase-3 OS=Neurospora crassa GN=cat-3 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.029e-33
Identity = 67/148 (45.27%), Postives = 95/148 (64.19%), Query Frame = 3
Query:   18 GIPQDYRHMEGFGVQTFTLVNKNGKVHYVKFHWKPTCGVKCLIDDEEAVKVGGSNHSHATQDLYDSIAAGNYPEWKLYIQTIDPDHEDQFDFDPLDVTKWWPEDIIPLQPVGRLGVNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKM 461
            GIP+ YRHM+GFG+ TF LV ++GK   VK+HWK   G   L+  EEA  + G N     QDL+D+I +GN P W+L +Q ID D    + FD LD TK+ PE+  PLQ +G + +N+N  N+FAE E ++F PG +V G+ ++ D +
Sbjct:  235 GIPRSYRHMDGFGIHTFRLVTEDGKSKLVKWHWKTKQGKAALVW-EEAQVLAGKNADFHRQDLWDAIESGNAPSWELAVQLIDEDKAQAYGFDLLDPTKFLPEEFAPLQVLGEMTLNRNPMNYFAETEQISFQPGHIVRGVDFTEDPL 381          
BLAST of CN192246 vs. ExPASy Swiss-Prot
Match: CATA_VIBCH (Catalase OS=Vibrio cholerae GN=VC_1585 PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 5.262e-33
Identity = 67/152 (44.08%), Postives = 96/152 (63.16%), Query Frame = 3
Query:    6 FDDVGIPQDYRHMEGFGVQTFTLVNKNGKVHYVKFHWKPTCGVKCLIDDEEAVKVGGSNHSHATQDLYDSIAAGNYPEWKLYIQTIDPDHEDQFDFDPLDVTKWWPEDIIPLQPVGRLGVNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKM 461
            + ++G P  YR M+GFGV  +  +N+ G V+YVKFHWK   G++ L  DE  VKV G + +H T DLY  I AGN+P+W LY+Q + P+   + D++ LD TK W +  +P + VG + +NK  DNFF E E  AF P  ++PGI  S D++
Sbjct:  197 YTNLGTPASYRTMDGFGVHAYKWINQKGDVNYVKFHWKSLQGIESLRPDE-VVKVQGQDFNHLTNDLYTQINAGNHPKWDLYVQVLTPEQLSKLDYNGLDATKVWLD--VPEKKVGTMTLNKVPDNFFLETEQSAFAPSNLIPGIEPSEDRL 345          
The following BLAST results are available for this feature:
BLAST of CN192246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CATA_CALJA3.644e-3446.71Catalase OS=Callithrix jacchus GN=CAT PE=2 SV=3[more]
CATA_BOVIN3.644e-3447.37Catalase OS=Bos taurus GN=CAT PE=1 SV=3[more]
CATA2_CAEEL3.644e-3444.74Catalase-2 OS=Caenorhabditis elegans GN=ctl-1 PE=2... [more]
CATA_RAT1.060e-3346.71Catalase OS=Rattus norvegicus GN=Cat PE=1 SV=3[more]
CATA_DEIRA1.060e-3344.59Catalase OS=Deinococcus radiodurans GN=katA PE=1 S... [more]
CATA_CAVPO2.362e-3346.05Catalase OS=Cavia porcellus GN=CAT PE=2 SV=4[more]
CATA_HUMAN3.085e-3345.39Catalase OS=Homo sapiens GN=CAT PE=1 SV=3[more]
CATA_PIG4.029e-3345.39Catalase OS=Sus scrofa GN=CAT PE=1 SV=4[more]
CAT3_NEUCR4.029e-3345.27Catalase-3 OS=Neurospora crassa GN=cat-3 PE=1 SV=1[more]
CATA_VIBCH5.262e-3344.08Catalase OS=Vibrio cholerae GN=VC_1585 PE=3 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0006J09_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192246 ID=CN192246; Name=CN192246; organism=Citrus sinensis; type=EST; length=463bp
GAGGCTTTGATGATGTGGGTATTCCACAAGATTACAGGCACATGGAAGGC
TTCGGTGTTCAAACTTTTACACTGGTCAATAAGAATGGGAAAGTGCACTA
TGTGAAATTCCACTGGAAACCAACTTGTGGAGTTAAGTGTTTGATAGATG
ATGAAGAAGCAGTAAAGGTTGGTGGATCTAATCACAGCCACGCTACTCAG
GATCTCTACGACTCAATTGCAGCTGGAAACTATCCTGAGTGGAAACTCTA
CATTCAGACTATTGATCCCGATCACGAGGACCAATTTGACTTTGACCCAC
TGGACGTAACCAAGTGGTGGCCTGAGGACATCATCCCTCTGCAGCCAGTT
GGACGCTTGGGCGTGAACAAGAACATCGATAATTTCTTTGCGGAAAATGA
AATGCTTGCATTTAACCCTGGTATCGTGGTTCCTGGGATCTACTACTCAA
ATGATAAGATGCT
back to top