CN192216

Overview
NameCN192216
Unique NameCN192216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length355
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN192216 vs. ExPASy Swiss-Prot
Match: ASGX_PYRKO (Putative L-asparaginase OS=Pyrococcus kodakaraensis GN=TK2246 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.003e-12
Identity = 35/67 (52.24%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:   64 TVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTYASNLCGVSCTGEGEAIIRATLARDVA 264
            TVG V  D E    A TSTGG+  K  GR+GD+P+IG GTYA+ + G SCTG GE  I+  LA+  A
Sbjct:  176 TVGAVAFDGE-EVVAGTSTGGVFLKMFGRVGDTPIIGGGTYANEVAGASCTGLGEVAIKLALAKSAA 241
[Close]
BLAST of CN192216 vs. ExPASy Swiss-Prot
Match: ASGX_PYRAB (Putative L-asparaginase OS=Pyrococcus abyssi GN=PYRAB02120 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.003e-12
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   64 TVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTYASNLCGVSCTGEGEAIIRATLAR 255
            TVG V  D E    A TSTGG+  K  GR+GD+P+IGAGTYA+ + G SCTG GE  I+  LA+
Sbjct:  175 TVGAVAFDGE-EVVAGTSTGGVFLKMFGRVGDTPIIGAGTYANEVAGASCTGLGEVAIKLALAK 237
The following BLAST results are available for this feature:
BLAST of CN192216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ASGX_PYRKO4.003e-1252.24Putative L-asparaginase OS=Pyrococcus kodakaraensi... [more]
ASGX_PYRAB4.003e-1254.69Putative L-asparaginase OS=Pyrococcus abyssi GN=PY... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006I16_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006I16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192216 ID=CN192216; Name=CN192216; organism=Citrus sinensis; type=EST; length=355bp
CTGCAGCCACACGACAGCCCCTTGCAAATGAACGGACTTCCAATAAGCCT
GTACGCCCCAGAAACGGTTGGGTGCGTTGTGGTTGACCAGGAGGGTCGGT
GCGCTGCAGCCACGTCAACGGGAGGGCTGATGAATAAGAGGACCGGCAGA
ATCGGTGACTCGCCTCTTATTGGTGCTGGGACCTACGCCTCTAATCTTTG
TGGGGTCTCATGCACGGGAGAAGGGGAGGCCATCATACGTGCGACCTTGG
CGCGTGATGTGGCGGCTGTGATGGAGTACAAAGGCTTGTGCCTNNGCAGA
GGCTGTTGATTTTGTGATTAAGAGAGGCTCGATGAAGGGCAAGCTGGACT
CATCG
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