CN192198

Overview
NameCN192198
Unique NameCN192198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_LEUCK (Phosphoglycerate kinase OS=Leuconostoc citreum (strain KM20) GN=pgk PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.266e-18
Identity = 43/73 (58.90%), Postives = 58/73 (79.45%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E   FA GT AI ++L +++  G TTI+GGGDS AAV+++G+ADK+SHISTGGGASLE LEGK LPG+ ++ +
Sbjct:  332 EMPNFAKGTLAIGEELVKVTENGGTTIVGGGDSTAAVQQLGVADKLSHISTGGGASLEYLEGKELPGIASISE 404          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_CLONN (Phosphoglycerate kinase OS=Clostridium novyi (strain NT) GN=pgk PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.266e-18
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            EF  FA GT A+A+ +AE      TTIIGGGDS AAV ++G  DKM+HISTGGGASLE LEGK LPG++AL D
Sbjct:  328 EFANFAKGTIAVAEAMAEADA---TTIIGGGDSAAAVNQLGFGDKMTHISTGGGASLEFLEGKELPGIVALSD 397          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_CHLT3 (Phosphoglycerate kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=pgk PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.266e-18
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = -3
Query:  198 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 419
            E +KFA GT A+A+ LA+ + +G  T+IGGGDS AA+   GL D ++H+STGGGASLE LEGK LPG+ AL +A
Sbjct:  324 EMEKFAKGTMAVAQALADATKQGAITVIGGGDSAAAIAVAGLEDSVTHVSTGGGASLEFLEGKELPGIAALSNA 397          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_RHOSR (Phosphoglycerate kinase OS=Rhodococcus sp. (strain RHA1) GN=pgk PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.653e-18
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = -3
Query:  204 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 419
            EF+KFAAGT+ +A+ + E +GKG  +++GGGDS AAV ++GL  D  SHISTGGGASLE LEGK LPG+  L+
Sbjct:  330 EFEKFAAGTKGVAEAIIEATGKGAYSVVGGGDSAAAVRQLGLPEDGFSHISTGGGASLEYLEGKELPGIAVLE 402          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_RHOOB (Phosphoglycerate kinase OS=Rhodococcus opacus (strain B4) GN=pgk PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.653e-18
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = -3
Query:  204 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 419
            EF+KFAAGT+ +A+ + E +GKG  +++GGGDS AAV ++GL  D  SHISTGGGASLE LEGK LPG+  L+
Sbjct:  330 EFEKFAAGTKGVAEAIIEATGKGAYSVVGGGDSAAAVRQLGLPEDGFSHISTGGGASLEYLEGKELPGIAVLE 402          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_LEPIN (Phosphoglycerate kinase OS=Leptospira interrogans GN=pgk PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.653e-18
Identity = 45/71 (63.38%), Postives = 57/71 (80.28%), Query Frame = -3
Query:  207 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 419
            E DKFA+GT AIAK +A+   K   T++GGGDS+AA+ K G+ADK++HISTGGGASLE +EG+ LPGV AL
Sbjct:  323 EMDKFASGTMAIAKAVAKSKAK---TVVGGGDSIAAINKAGVADKITHISTGGGASLEFMEGRKLPGVEAL 390          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_BACHK (Phosphoglycerate kinase OS=Bacillus thuringiensis subsp. konkukian GN=pgk PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.653e-18
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E   F+ GT+A+ + LA+   +G  ++IGGGDS AAVEK G+ADKMSHISTGGGASLE +EGK LPGV+ L+D
Sbjct:  323 EMTPFSQGTKAVGQALAD--AEGTYSVIGGGDSAAAVEKFGMADKMSHISTGGGASLEFMEGKELPGVVCLND 393          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_BACCQ (Phosphoglycerate kinase OS=Bacillus cereus (strain Q1) GN=pgk PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.653e-18
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E   F+ GT+A+ + LA+   +G  ++IGGGDS AAVEK G+ADKMSHISTGGGASLE +EGK LPGV+ L+D
Sbjct:  323 EMTPFSQGTKAVGQALAD--AEGTYSVIGGGDSAAAVEKFGMADKMSHISTGGGASLEFMEGKELPGVVCLND 393          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_BACC7 (Phosphoglycerate kinase OS=Bacillus cereus (strain AH187) GN=pgk PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.653e-18
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E   F+ GT+A+ + LA+   +G  ++IGGGDS AAVEK G+ADKMSHISTGGGASLE +EGK LPGV+ L+D
Sbjct:  323 EMTPFSQGTKAVGQALAD--AEGTYSVIGGGDSAAAVEKFGMADKMSHISTGGGASLEFMEGKELPGVVCLND 393          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_LEUMM (Phosphoglycerate kinase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.159e-18
Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E   FA GT AI ++L +++  G TTI+GGGDS AAV+++G+ADK++HISTGGGASLE LEGK LPG+ ++ +
Sbjct:  332 EMSNFAKGTLAIGEELVKVTENGGTTIVGGGDSTAAVQQLGVADKLTHISTGGGASLEYLEGKELPGIASISE 404          
The following BLAST results are available for this feature:
BLAST of CN192198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_LEUCK1.266e-1858.90Phosphoglycerate kinase OS=Leuconostoc citreum (st... [more]
PGK_CLONN1.266e-1864.38Phosphoglycerate kinase OS=Clostridium novyi (stra... [more]
PGK_CHLT31.266e-1858.11Phosphoglycerate kinase OS=Chloroherpeton thalassi... [more]
PGK_RHOSR1.653e-1860.27Phosphoglycerate kinase OS=Rhodococcus sp. (strain... [more]
PGK_RHOOB1.653e-1860.27Phosphoglycerate kinase OS=Rhodococcus opacus (str... [more]
PGK_LEPIN1.653e-1863.38Phosphoglycerate kinase OS=Leptospira interrogans ... [more]
PGK_BACHK1.653e-1861.64Phosphoglycerate kinase OS=Bacillus thuringiensis ... [more]
PGK_BACCQ1.653e-1861.64Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_BACC71.653e-1861.64Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_LEUMM2.159e-1857.53Phosphoglycerate kinase OS=Leuconostoc mesenteroid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006I06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192198 ID=CN192198; Name=CN192198; organism=Citrus sinensis; type=EST; length=421bp
TTTTTTTTTTTTTTTTTCCAAAAAAATGCATCACCATTGATGCCTGTGAA
AAAAAATTTATTTTTACTCTTACAGCATCTACAAAACCAACTCTAATGAT
AAAGTTTAACTTTTATCCACTCTGGGCTGACAACCAGCCACACATACAAC
TCTGGAAATGGCACATTTAAAAAAGGAAAGTCCAGGAACTGGGTTTAAGC
ATCATCAAGAGCAAGCACACCAGGGAGTGTTTTGCCCTCAAGGAGCTCTA
AGCTGGCTCCACCTCCAGTGGAGATATGGCTCATCTTGTCAGCCAGACCA
ACCTTCTCTACGGCTGCAACTGAGTCACCTCCTCCAATGATTGTGGTCAC
TCCCTTCCCGCTGAGCTCCGCAAGCTTCTTGGCAATTGCCTCAGTGCCAG
CAGCAAATTTATCAAATTCAA
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