CN192198

Overview
NameCN192198
Unique NameCN192198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_YEAST (Phosphoglycerate kinase OS=Saccharomyces cerevisiae GN=PGK1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.820e-18
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            EF+KFAAGT+A+  ++ + S  G T IIGGGD+    +K G+ DK+SH+STGGGASLELLEGK LPGV  L +
Sbjct:  342 EFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSE 414          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_OENOB (Phosphoglycerate kinase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.820e-18
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E   FA GT  + K +  L+ +G  TI+GGGDS AAV ++G+AD+ +HISTGGGASLE LEGKTLPG+ A+ D
Sbjct:  331 EMSNFANGTLELGKFIGSLTSEGAATIVGGGDSTAAVSQLGIADQFTHISTGGGASLEYLEGKTLPGIAAISD 403          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_CHICK (Phosphoglycerate kinase OS=Gallus gallus GN=PGK PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.820e-18
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = -3
Query:  207 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 419
            E+DKF+ GT+A+  K+ E++GKG  TIIGGGD+     K    DK+SH+STGGGASLELLEGK LPGV AL
Sbjct:  344 EWDKFSKGTKALMDKVVEVTGKGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDAL 414          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_BACCN (Phosphoglycerate kinase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.820e-18
Identity = 45/73 (61.64%), Postives = 56/73 (76.71%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E   F+ GT A+ + LA+   +G  ++IGGGDS AAVEK G+ADKMSHISTGGGASLE +EGK LPGV+ L+D
Sbjct:  323 EMTPFSNGTRAVGQALAD--AEGTYSVIGGGDSAAAVEKFGMADKMSHISTGGGASLEFMEGKELPGVVCLND 393          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_YARLI (Phosphoglycerate kinase OS=Yarrowia lipolytica GN=PGK1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.683e-18
Identity = 43/73 (58.90%), Postives = 51/73 (69.86%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            EFD FA GT+A+     +    G T IIGGGD+    +K G  DK+SH+STGGGASLELLEGKTLPGV AL +
Sbjct:  343 EFDNFAKGTKAVLDACVKAVDNGATVIIGGGDTATVAKKYGAEDKLSHVSTGGGASLELLEGKTLPGVAALSE 415          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_EXISA (Phosphoglycerate kinase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=pgk PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.810e-18
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E DK+A GT+ +A+ LA+       +IIGGGDS AA  K GLADKMSHISTGGGASLE +EGK LPGV AL+D
Sbjct:  324 ELDKYANGTKGVAQALAD---SDAYSIIGGGDSAAAAAKFGLADKMSHISTGGGASLEFMEGKKLPGVEALND 393          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_DEIRA (Phosphoglycerate kinase OS=Deinococcus radiodurans GN=pgk PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.810e-18
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = -3
Query:  207 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 419
            EFD+FAAGT A+A  +  L  +  T ++GGGDSV+A+ K G AD++ HISTGGGASLELLEGK LPGV+A+
Sbjct:  341 EFDQFAAGTNAVAAAVGSLKDQAYT-VVGGGDSVSAINKSGKADQIDHISTGGGASLELLEGKELPGVVAM 410          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_CLOBB (Phosphoglycerate kinase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=pgk PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.810e-18
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            EF+ F  GT A+AK +A+      TTIIGGGDS AAV  +G  DKM+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  327 EFENFNKGTIAVAKAMAD---SNATTIIGGGDSAAAVNILGFGDKMTHISTGGGASLEFLEGKVLPGISALND 396          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_CLOBA (Phosphoglycerate kinase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=pgk PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.810e-18
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            EF+ F  GT A+AK +A+      TTIIGGGDS AAV  +G  DKM+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  327 EFENFNKGTIAVAKAMAD---SNATTIIGGGDSAAAVNILGFGDKMTHISTGGGASLEFLEGKVLPGISALND 396          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_BACWK (Phosphoglycerate kinase OS=Bacillus weihenstephanensis (strain KBAB4) GN=pgk PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.810e-18
Identity = 45/73 (61.64%), Postives = 56/73 (76.71%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E   FA GT+A+ + LA+   +   ++IGGGDS AAVEK G+ADKMSHISTGGGASLE +EGK LPGV+ L+D
Sbjct:  323 EMTPFAEGTKAVGQALAD--AEDTYSVIGGGDSAAAVEKFGMADKMSHISTGGGASLEFMEGKELPGVVCLND 393          
The following BLAST results are available for this feature:
BLAST of CN192198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_YEAST2.820e-1858.90Phosphoglycerate kinase OS=Saccharomyces cerevisia... [more]
PGK_OENOB2.820e-1857.53Phosphoglycerate kinase OS=Oenococcus oeni (strain... [more]
PGK_CHICK2.820e-1861.97Phosphoglycerate kinase OS=Gallus gallus GN=PGK PE... [more]
PGK_BACCN2.820e-1861.64Phosphoglycerate kinase OS=Bacillus cereus subsp. ... [more]
PGK_YARLI3.683e-1858.90Phosphoglycerate kinase OS=Yarrowia lipolytica GN=... [more]
PGK_EXISA4.810e-1864.38Phosphoglycerate kinase OS=Exiguobacterium sp. (st... [more]
PGK_DEIRA4.810e-1861.97Phosphoglycerate kinase OS=Deinococcus radiodurans... [more]
PGK_CLOBB4.810e-1863.01Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_CLOBA4.810e-1863.01Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_BACWK4.810e-1861.64Phosphoglycerate kinase OS=Bacillus weihenstephane... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006I06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192198 ID=CN192198; Name=CN192198; organism=Citrus sinensis; type=EST; length=421bp
TTTTTTTTTTTTTTTTTCCAAAAAAATGCATCACCATTGATGCCTGTGAA
AAAAAATTTATTTTTACTCTTACAGCATCTACAAAACCAACTCTAATGAT
AAAGTTTAACTTTTATCCACTCTGGGCTGACAACCAGCCACACATACAAC
TCTGGAAATGGCACATTTAAAAAAGGAAAGTCCAGGAACTGGGTTTAAGC
ATCATCAAGAGCAAGCACACCAGGGAGTGTTTTGCCCTCAAGGAGCTCTA
AGCTGGCTCCACCTCCAGTGGAGATATGGCTCATCTTGTCAGCCAGACCA
ACCTTCTCTACGGCTGCAACTGAGTCACCTCCTCCAATGATTGTGGTCAC
TCCCTTCCCGCTGAGCTCCGCAAGCTTCTTGGCAATTGCCTCAGTGCCAG
CAGCAAATTTATCAAATTCAA
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