CN192198

Overview
NameCN192198
Unique NameCN192198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_BACSU (Phosphoglycerate kinase OS=Bacillus subtilis GN=pgk PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 1.766e-20
Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E D FA GT+A+A+ LAE   K   ++IGGGDS AAVEK GLADKMSHISTGGGASLE +EGK LPGV AL+D
Sbjct:  323 EIDLFAQGTKAVAEALAE--AKDTYSVIGGGDSAAAVEKFGLADKMSHISTGGGASLEFMEGKELPGVAALND 393          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_CHLP8 (Phosphoglycerate kinase OS=Chlorobaculum parvum (strain NCIB 8327) GN=pgk PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.307e-20
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E D+FA GT A+A+ LA+ +  G  TIIGGGDS AA+ K GL+DK++H+STGGGASLE LEGK LPG+ AL+D
Sbjct:  325 EIDQFAKGTFAVAQALADATDAGAITIIGGGDSAAAIAKAGLSDKVTHVSTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGKH_CHLRE (Phosphoglycerate kinase, chloroplastic OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.307e-20
Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            EF +    T +IA  LA L+ KG  TIIGGGDSVAAVE+ G+A+KMSHISTGGGASLELLEGK LPGV ALD+
Sbjct:  388 EFPQVRQRTVSIANTLAGLTPKGCITIIGGGDSVAAVEQAGVAEKMSHISTGGGASLELLEGKVLPGVAALDE 460          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_TREDE (Phosphoglycerate kinase OS=Treponema denticola GN=pgk PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.013e-20
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = -3
Query:  204 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 419
            EF+ F+ GTE  A+ +A  + KG  TI+GGGDSVAAV K  LADKMSH+STGGGASLE LEGK LPG+  LD
Sbjct:  346 EFEAFSKGTEETARLVAAATEKGALTIVGGGDSVAAVNKFNLADKMSHVSTGGGASLEFLEGKVLPGIACLD 417          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_BACP2 (Phosphoglycerate kinase OS=Bacillus pumilus (strain SAFR-032) GN=pgk PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.013e-20
Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E D FA GT+AIA+ LAE   K   ++IGGGDS AAVEK GLAD+MSHISTGGGASLE +EGK LPGV AL+D
Sbjct:  323 EIDAFAKGTKAIAEALAE--AKDTYSVIGGGDSAAAVEKFGLADQMSHISTGGGASLEFMEGKELPGVTALND 393          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_CHLPD (Phosphoglycerate kinase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=pgk PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.139e-20
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E D FA GT AIAK LAE +  G  TI+GGGDS AA+ K  L+D ++HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  325 EIDNFAEGTFAIAKALAEATSSGAITIVGGGDSAAAIAKAALSDSITHISTGGGASLEFLEGKALPGIEALND 397          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_CHLCH (Phosphoglycerate kinase OS=Chlorobium chlorochromatii (strain CaD3) GN=pgk PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.139e-20
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E D FA GT A+A+ LA+ + +G TTI+GGGDS AA+ K GLA +++HISTGGGASLE LEGK LPG+ AL++
Sbjct:  325 ELDNFATGTIAVAQALADATAQGATTIVGGGDSAAAIAKAGLASEITHISTGGGASLEFLEGKELPGIAALNN 397          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_ANOFW (Phosphoglycerate kinase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=pgk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.712e-20
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E D FA GT+A+A+ LA+   K   T+IGGGDS AAVEK GLA+KM HISTGGGASLE +EGK LPGV+AL+D
Sbjct:  323 EMDAFAEGTKAVAQALAD--AKDTYTVIGGGDSAAAVEKFGLANKMDHISTGGGASLEFMEGKQLPGVVALND 393          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_BACLD (Phosphoglycerate kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=pgk PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E D FA GT A+A+ LAE +     ++IGGGDS AAVEK GLADKMSHISTGGGASLE +EGK LPGV AL+D
Sbjct:  323 EIDAFAKGTRAVAEALAEAND--TYSVIGGGDSAAAVEKFGLADKMSHISTGGGASLEFMEGKELPGVKALND 393          
BLAST of CN192198 vs. ExPASy Swiss-Prot
Match: PGK_LACSS (Phosphoglycerate kinase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=pgk PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.145e-19
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = -3
Query:  201 EFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 419
            E D FA GT AI + L  LSG   TTI+GGGDS AAV+K+G+ DK++HISTGGGASLE LEGKTLPG+ A+ D
Sbjct:  333 EMDNFAKGTLAIGEFLGNLSG--ATTIVGGGDSTAAVKKLGVGDKLTHISTGGGASLEYLEGKTLPGIAAISD 403          
The following BLAST results are available for this feature:
BLAST of CN192198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_BACSU1.766e-2069.86Phosphoglycerate kinase OS=Bacillus subtilis GN=pg... [more]
PGK_CHLP82.307e-2063.01Phosphoglycerate kinase OS=Chlorobaculum parvum (s... [more]
PGKH_CHLRE2.307e-2069.86Phosphoglycerate kinase, chloroplastic OS=Chlamydo... [more]
PGK_TREDE3.013e-2065.28Phosphoglycerate kinase OS=Treponema denticola GN=... [more]
PGK_BACP23.013e-2069.86Phosphoglycerate kinase OS=Bacillus pumilus (strai... [more]
PGK_CHLPD5.139e-2064.38Phosphoglycerate kinase OS=Chlorobium phaeobactero... [more]
PGK_CHLCH5.139e-2061.64Phosphoglycerate kinase OS=Chlorobium chlorochroma... [more]
PGK_ANOFW6.712e-2067.12Phosphoglycerate kinase OS=Anoxybacillus flavither... [more]
PGK_BACLD8.766e-2068.49Phosphoglycerate kinase OS=Bacillus licheniformis ... [more]
PGK_LACSS1.145e-1965.75Phosphoglycerate kinase OS=Lactobacillus sakei sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006I06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192198 ID=CN192198; Name=CN192198; organism=Citrus sinensis; type=EST; length=421bp
TTTTTTTTTTTTTTTTTCCAAAAAAATGCATCACCATTGATGCCTGTGAA
AAAAAATTTATTTTTACTCTTACAGCATCTACAAAACCAACTCTAATGAT
AAAGTTTAACTTTTATCCACTCTGGGCTGACAACCAGCCACACATACAAC
TCTGGAAATGGCACATTTAAAAAAGGAAAGTCCAGGAACTGGGTTTAAGC
ATCATCAAGAGCAAGCACACCAGGGAGTGTTTTGCCCTCAAGGAGCTCTA
AGCTGGCTCCACCTCCAGTGGAGATATGGCTCATCTTGTCAGCCAGACCA
ACCTTCTCTACGGCTGCAACTGAGTCACCTCCTCCAATGATTGTGGTCAC
TCCCTTCCCGCTGAGCTCCGCAAGCTTCTTGGCAATTGCCTCAGTGCCAG
CAGCAAATTTATCAAATTCAA
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