CN192132

Overview
NameCN192132
Unique NameCN192132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 8.664e-64
Identity = 116/163 (71.17%), Postives = 133/163 (81.60%), Query Frame = 1
Query:   52 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 540
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYP GFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR    G K IP++ T+D RTIRYPDPLIK NDTI++D
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDTTYPVGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQID 163          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 1.132e-63
Identity = 115/163 (70.55%), Postives = 134/163 (82.21%), Query Frame = 1
Query:   52 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 540
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +  +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++D
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIDKTGEHFRLVYDTKGRFAVQRITVEEAKYKLCKVRKITVGMKGIPHLVTHDARTIRYPDPLIKVNDTVQID 163          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 3.640e-62
Identity = 112/163 (68.71%), Postives = 134/163 (82.21%), Query Frame = 1
Query:   52 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 540
            MARG KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL   EV  I+MQR V VDGKVRTD TYPAG+MDV+++ KT E FRL+YD KGRF +H +  EEAK+KLCKV+  Q G KG+P++ T+DGRTIRYPDPLI AND++++D
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVD 163          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 235.728 bits (600), Expect = 1.059e-61
Identity = 112/163 (68.71%), Postives = 133/163 (81.60%), Query Frame = 1
Query:   52 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 540
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQ  + +DGKVR D TYPAGF+DV+SI KT E+FRL+Y+TKG F +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++D
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQID 163          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.407e-60
Identity = 109/163 (66.87%), Postives = 131/163 (80.37%), Query Frame = 1
Query:   52 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 540
            M RG KKHLKRL AP HWML KL G +AP+PS+GPH  RE LPL + LRNRL YAL  REV AI+MQ+HV V GKVRTD TYPAGFMDV+++  TNE+FRL YD KG+F +H +  EEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+ANDT+K+D
Sbjct:    1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKID 163          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 8.685e-56
Identity = 103/144 (71.53%), Postives = 119/144 (82.64%), Query Frame = 1
Query:  109 LDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 540
            LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++D
Sbjct:    1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQID 144          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.481e-55
Identity = 106/158 (67.09%), Postives = 121/158 (76.58%), Query Frame = 1
Query:   58 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTI 531
            RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E   IL QR V VDGKVRT   +P GFMDVV+I +TNE FR+LYDTKGR+ +H ++  EA FKLCKV+SV+   KG+P + T DGRTIRYPDP +K NDTI
Sbjct:    2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTI 159          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.706e-49
Identity = 100/164 (60.98%), Postives = 120/164 (73.17%), Query Frame = 1
Query:   55 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQR--HVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 540
            ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL  R+V  IL  +  +V VD KVR DK YP G MDVV I KT+++FR+LYDTKGRF L SL  EEAK+KL KV +   G   IPYI T+D RTIR+P+P IK  DT+K D
Sbjct:    1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYD 164          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.913e-37
Identity = 76/162 (46.91%), Postives = 108/162 (66.67%), Query Frame = 1
Query:   52 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKL 537
            M  G + HLKR  APK WMLDK GG FA  P+SGPHK  EC+PL  ++   L+YA  ++E+  IL ++++ V+G+VRT+  +P G  DVVSI KT E+FR+LY+   +F LH +  EEA ++L KV + ++  +GIPYI +  G +IR+ DP I    TIK+
Sbjct:    1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKV-TKKYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKI 161          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.707e-27
Identity = 64/161 (39.75%), Postives = 94/161 (58.39%), Query Frame = 1
Query:   58 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 540
            +G +KHLKRL APK+W + +    +  +PS+GPH     LPL+LVLR+ L YA   RE   ++    VLVDG  R D  YP G MDV+S+P  NE+F ++ D KGR +L+ ++D     KLCK+ +    + G   +N +DGR     + ++K  D  K +
Sbjct:    4 KGPRKHLKRLPAPKNWQISRKTNKYTTRPSAGPHAMGSSLPLLLVLRDLLGYADNAREAKKVIKMGKVLVDGVKRKDHRYPTGLMDVISLPDANESFLVVLDEKGRIKLNKIKDNTK--KLCKIENKTVIKGGHIQLNLHDGR-----NQIVKLADATKAE 157          
The following BLAST results are available for this feature:
BLAST of CN192132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
RS4X_MONDO8.664e-6471.1740S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4Y1_PONPY1.132e-6370.5540S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]
RS4_DROME3.640e-6268.7140S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4Y2_HUMAN1.059e-6168.7140S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_CANAL3.407e-6066.8740S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_HORSE8.685e-5671.5340S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_CAEEL1.481e-5567.0940S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_TETTH2.706e-4960.9840S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_ENCCU6.913e-3746.9140S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_META31.707e-2739.7530S ribosomal protein S4e OS=Methanococcus aeolicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006G08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192132 ID=CN192132; Name=CN192132; organism=Citrus sinensis; type=EST; length=541bp
GAGGGAACAGACAAGCAGCCGCAGCGAGGCAGCAGCTTCAAACTCACAAA
AATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAAGC
ACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCATCT
GGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGAAA
CCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGATGC
AACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACCCT
GCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTCCG
TCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGATG
AGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTTGGCCAG
AAAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCGCTACCC
TGACCCACTCATCAAAGCCAATGATACCATCAAACTTGACT
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