CN192132

Overview
NameCN192132
Unique NameCN192132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.035e-24
Identity = 61/161 (37.89%), Postives = 94/161 (58.39%), Query Frame = 1
Query:   58 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 540
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +E + +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR     + ++K +D  K +
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLK--KTDKTDVKLCKIVNKTVVKGGNIQLNLHDGR-----NQIVKVSDAAKAE 157          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.035e-24
Identity = 63/155 (40.65%), Postives = 90/155 (58.06%), Query Frame = 1
Query:   52 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP 507
            MAR G ++HLK L APK W + +  G F  KPS GPH     +PL++++R+ L YA T RE   ++ + H  +DG+VR +  YP GFMDV+ I  T E +R+L      F LH +  EEA+FKL ++      + G   ++ +DGR   IR  DP
Sbjct:    1 MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDP 155          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.307e-24
Identity = 60/161 (37.27%), Postives = 93/161 (57.76%), Query Frame = 1
Query:   58 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 540
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+L++R+ LK A   RE   I+    +L+DG  R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR     + ++K  + +K +
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGR-----NQIVKVANALKAE 157          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.307e-24
Identity = 60/161 (37.27%), Postives = 93/161 (57.76%), Query Frame = 1
Query:   58 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 540
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+L++R+ LK A   RE   I+    +L+DG  R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR     + ++K  + +K +
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGR-----NQIVKVANALKAE 157          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_METS3 (30S ribosomal protein S4e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4e PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.145e-23
Identity = 62/159 (38.99%), Postives = 87/159 (54.72%), Query Frame = 1
Query:   61 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKL 537
            G +KHLK   APK W +      +  KPS+G H     L L LV+R+ LK A   RE   I+   +VLVDG+V  D  +P GFMD++ IPKT E +R+L D KGR +L+ +  EE   KLCK+ +    + G   +N +DG+ +   +      D I L
Sbjct:    5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDL 161          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.550e-23
Identity = 63/159 (39.62%), Postives = 90/159 (56.60%), Query Frame = 1
Query:   52 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND 525
            MAR G KKHLK L APK W + +    +A KPS GPH    C PL++++R+ L YA T RE   ++ + H  VDG+VR +  YP G MDV+ I  T E +R++        L  +  EEAK+KL ++ +    + G   +N +DGR +     LIK +D
Sbjct:    1 MARMGGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNV-----LIKVSD 154          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.682e-23
Identity = 55/152 (36.18%), Postives = 90/152 (59.21%), Query Frame = 1
Query:   61 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP 507
            G K+H+KRL AP  W +  K GG FAP+P  GPH     +PL++++R+ L YA   RE   I+ +  + VDG VR +  +P G MDVV IP+T + +R++ +   R  +  + +EEA+ K+C++++  + + G   I  +DG+   +   DP
Sbjct:    7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDP 158          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 7.420e-23
Identity = 62/164 (37.80%), Postives = 90/164 (54.88%), Query Frame = 1
Query:   52 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDPLIKANDTIK 534
            MAR G ++ LK L AP+ W + +    +A KP  GPH + + LPL+L++RN L YA T RE   ++ + H  VDG VR D  +P GFMDV+ +  T E FR+L      F+LH + +EE   K  ++ +    + G   +N +DGR I  R  DP     D  +
Sbjct:    1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYR 164          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-21
Identity = 57/160 (35.62%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   61 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 540
            G  +HLK L AP ++ + K    +  KPS GPH   E +PL+L++R+ LK A T RE   I+  + +LVDGK R D  +  G MDV+SIP+   N+R++ D     RL  +   E+K KL KV   +  + G   + ++DGR        +K  D++ ++
Sbjct:    5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIE 164          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.828e-21
Identity = 51/140 (36.43%), Postives = 79/140 (56.43%), Query Frame = 1
Query:   73 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI 492
            HL+R  +P+ W +++ G  ++ KPS GPH +   +PL ++LR+   YA T RE   I+ + +V VDGKVR D  YP G MDV+ +   NE +R++ D     R   +   EA  K+C++      + G   +N +DGR I
Sbjct:    3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNI 142          
The following BLAST results are available for this feature:
BLAST of CN192132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
RS4E_METMP1.035e-2437.8930S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_HYPBU1.035e-2440.6530S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_METVS2.307e-2437.2730S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA2.307e-2437.2730S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METS31.145e-2338.9930S ribosomal protein S4e OS=Methanobrevibacter sm... [more]
RS4E_STAMF2.550e-2339.6230S ribosomal protein S4e OS=Staphylothermus marin... [more]
RS4E_METKA5.682e-2336.1830S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_AERPE7.420e-2337.8030S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]
RS4E_KORCO1.828e-2135.6330S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_CALMQ1.828e-2136.4330S ribosomal protein S4e OS=Caldivirga maquilinge... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006G08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192132 ID=CN192132; Name=CN192132; organism=Citrus sinensis; type=EST; length=541bp
GAGGGAACAGACAAGCAGCCGCAGCGAGGCAGCAGCTTCAAACTCACAAA
AATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAAGC
ACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCATCT
GGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGAAA
CCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGATGC
AACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACCCT
GCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTCCG
TCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGATG
AGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTTGGCCAG
AAAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCGCTACCC
TGACCCACTCATCAAAGCCAATGATACCATCAAACTTGACT
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