CN192132

Overview
NameCN192132
Unique NameCN192132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.811e-19
Identity = 58/160 (36.25%), Postives = 85/160 (53.12%), Query Frame = 1
Query:   73 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLD 540
            HL++  AP  W +  K GG +A +PS+GPH     LPL +V+R+ L+YA T RE   I+ + ++ VDG VR D  +P G MDVV I  T E +R++ D    + L  +   EA  K  +V        G   ++ +DGR +  P  +   IK  DT+  D
Sbjct:    3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYD 162          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 53/153 (34.64%), Postives = 80/153 (52.29%), Query Frame = 1
Query:   73 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTI 531
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+  T+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTL 155          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 53/153 (34.64%), Postives = 80/153 (52.29%), Query Frame = 1
Query:   73 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTI 531
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+  T+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTL 155          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 53/153 (34.64%), Postives = 80/153 (52.29%), Query Frame = 1
Query:   73 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTI 531
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+  T+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTL 155          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 53/153 (34.64%), Postives = 80/153 (52.29%), Query Frame = 1
Query:   73 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTI 531
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+  T+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTL 155          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 53/153 (34.64%), Postives = 80/153 (52.29%), Query Frame = 1
Query:   73 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTI 531
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+  T+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTL 155          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 53/153 (34.64%), Postives = 80/153 (52.29%), Query Frame = 1
Query:   73 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTI 531
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+  T+
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTL 155          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.501e-19
Identity = 52/140 (37.14%), Postives = 73/140 (52.14%), Query Frame = 1
Query:   73 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI 492
            H KRL+ PK W + + G  +      GPH     LPL L++R+ LK     RE   IL +  VLVDG  R D  +P G  DV+++P  NE +R+L D KGR  L+ L +     KLC++ +    + G   +N  DG  I
Sbjct:    3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNI 141          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.470e-18
Identity = 51/140 (36.43%), Postives = 70/140 (50.00%), Query Frame = 1
Query:   73 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI 492
            H KRL+ P+ W   K G  +      GPH     LPL +++R+ LK     RE   IL +  VLVDG  R D  +P G  DV+++P  NE +R+  D KGR  LH L       KLC++ +    + G   +N  DG  I
Sbjct:    3 HQKRLSIPRSWKAGKKGYKWVSTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNI 141          
BLAST of CN192132 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 56/144 (38.89%), Postives = 78/144 (54.17%), Query Frame = 1
Query:   64 LKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRT 489
            +K+HL+ L  P+ W +  K  G +  KPS GPH     +P+ + LR+ L  A   REV  +L    VLVDG+   D  +P G  DV++IP+ NE +R+L D +G+  L  +  EEA  K  K +R V      I Y  T DGRT
Sbjct:    5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRT 147          
The following BLAST results are available for this feature:
BLAST of CN192132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
RS4E_PYRCJ3.811e-1936.2530S ribosomal protein S4e OS=Pyrobaculum calidifon... [more]
RS4E_SULIY4.977e-1934.6430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIN4.977e-1934.6430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIM4.977e-1934.6430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIL4.977e-1934.6430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIK4.977e-1934.6430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIA4.977e-1934.6430S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_METMA6.501e-1937.1430S ribosomal protein S4e OS=Methanosarcina mazei ... [more]
RS4E_METBF2.470e-1836.4330S ribosomal protein S4e OS=Methanosarcina barker... [more]
RS4E_NANEQ9.387e-1838.8930S ribosomal protein S4e OS=Nanoarchaeum equitans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006G08_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192132 ID=CN192132; Name=CN192132; organism=Citrus sinensis; type=EST; length=541bp
GAGGGAACAGACAAGCAGCCGCAGCGAGGCAGCAGCTTCAAACTCACAAA
AATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAAGC
ACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCATCT
GGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGAAA
CCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGATGC
AACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACCCT
GCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTCCG
TCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGATG
AGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTTGGCCAG
AAAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCGCTACCC
TGACCCACTCATCAAAGCCAATGATACCATCAAACTTGACT
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