CN192114

Overview
NameCN192114
Unique NameCN192114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192114 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.209e-39
Identity = 79/172 (45.93%), Postives = 116/172 (67.44%), Query Frame = -3
Query:  198 STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-----KNRMASQPASNN--ARPPTVQIRGQPVNQKSGCCST 692
            STIGV+F  RT++ +GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV++WL E+  +A  N+  ++ GNK DL   + VS E  +A A++ G+ F+ETSA  A N+E+AF  +   I     K  +A+Q AS+N   +  T+ +     NQ+  CCST
Sbjct:   43 STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSNLPGQGTTINVADASANQRRSCCST 214          
BLAST of CN192114 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.209e-39
Identity = 76/132 (57.58%), Postives = 100/132 (75.76%), Query Frame = -3
Query:  300 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 695
            ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E  I F ETSAK+  N+E+AF+ +A  I
Sbjct:   39 ISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of CN192114 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.230e-38
Identity = 72/146 (49.32%), Postives = 104/146 (71.23%), Query Frame = -3
Query:  258 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 695
            IST+G+DF+ + ++ DG  +KLQIWDTAGQERFR++T +YYR AH ++++YD+T+++SF+N++ WL EI  YA ++V  +L+GNK D T  +VV  E  +  A E G+PFMETSAKS  NV+ AF A+A  +K R    P+    R
Sbjct:   95 ISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQRSTKAPSEPRFR 240          
BLAST of CN192114 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.606e-38
Identity = 73/135 (54.07%), Postives = 99/135 (73.33%), Query Frame = -3
Query:  291 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 695
            I+TIG+DFKIRT+E  GK IKLQ+WDTAGQERFRTIT++YYRGA GI+++YDVTD  SF NV+ W   + ++A+E+    LVGNKCD   N+ VS E  +  A ++ +PF+E SAKS  NV+  F  +A+ I+ +
Sbjct:   44 ITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASIIQEK 178          
BLAST of CN192114 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.606e-38
Identity = 71/146 (48.63%), Postives = 106/146 (72.60%), Query Frame = -3
Query:  258 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 695
            IST+G+DF+ + ++ DG  +KLQIWDTAGQERFR++T +YYR AH ++++YD+T+++SF+N++ WL EI  YA ++V  +L+GNK D T ++VV  E  +  A E G+PFMETSA++  NV+ AF A+A  +K R A  P+    R
Sbjct:   98 ISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAKAPSEPRFR 243          
BLAST of CN192114 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.578e-38
Identity = 79/174 (45.40%), Postives = 115/174 (66.09%), Query Frame = -3
Query:  198 STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-----KNRMASQPASNNARPP----TVQIRGQPVNQKSGCCST 692
            STIGV+F  RT++ +GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV++WL E+  +A  N+  ++ GNK DL   + VS +   A +++ G+ F+ETSA  ATN+E+AF  +   I     K  +A+Q A+  A  P    T+ +     N K GCCST
Sbjct:   43 STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKGCCST 216          
BLAST of CN192114 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.578e-38
Identity = 76/145 (52.41%), Postives = 103/145 (71.03%), Query Frame = -3
Query:  255 TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARP 689
            TIG++FKI+TV  +GK IKLQIWDTAG++RFR + +S+YRG HG+I+VYDVTDQ SF NV  W+ +I RYA+ENV K+++GNK DL + KVV    A+ FAD + IPF E SAK + N+E+AF+++     NR+          P
Sbjct:   39 TIGIEFKIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNKNDLVSQKVVDPFLAQEFADSLDIPFKEISAKQSINIEEAFISLVKLCINRIEETSLKKTQSP 182          
BLAST of CN192114 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.103e-38
Identity = 77/172 (44.77%), Postives = 113/172 (65.70%), Query Frame = -3
Query:  207 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQ---------PVNQKSGC 695
            +ST+G+DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN+V+ W  +I  Y+ EN   +LVGNKCD+ + +VVS +  +  AD++G+ F ETSAK   NV+  F  +   I ++M    A +  + P  Q +GQ         P  Q+  C
Sbjct:   52 VSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKM----AESLDKDPQQQPKGQKLEANPTQKPAQQQCNC 219          
BLAST of CN192114 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.041e-37
Identity = 81/165 (49.09%), Postives = 109/165 (66.06%), Query Frame = -3
Query:  204 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNNARPPTVQIRGQPVNQKSGCC 695
            ISTI +DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID++A+E+V ++L+ NKCD+   +VV     +  A E  I F ETSAK+  N+E+AF+ +   I +     +P S N     +   G     KS CC
Sbjct:   39 ISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDHKRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKTPVKEPNSENV---DISSGGGVTGWKSKCC 200          
BLAST of CN192114 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.360e-37
Identity = 68/137 (49.64%), Postives = 103/137 (75.18%), Query Frame = -3
Query:  285 ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 695
            +ST+G+DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G I++YDVT+++SFN+V+ W+ +I  Y+ +N   +LVGNKCD+   +V+S+E  +  AD++G+ F ETSAK   NV+  F  +   I ++M+
Sbjct:   51 VSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMS 187          
The following BLAST results are available for this feature:
BLAST of CN192114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB2BV_BETVU7.209e-3945.93Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAB10_DISOM7.209e-3957.58Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RAB26_RAT1.230e-3849.32Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
SEC4_CANAL1.606e-3854.07Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB26_MOUSE1.606e-3848.63Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RB11C_LOTJA3.578e-3845.40Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RABF1_DICDI3.578e-3852.41Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
RAB3_CAEEL6.103e-3844.77Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB10_RAT1.041e-3749.09Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RAB3_DROME1.360e-3749.64Ras-related protein Rab-3 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006F20_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192114 ID=CN192114; Name=CN192114; organism=Citrus sinensis; type=EST; length=697bp
CCCTTTTTTTTTTTTTTCTTGAACCCAATACATTTGAAAAGAATGGAAAC
TTTAGTAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAA
CCTTCATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAA
AGAACATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGT
GGAGCAGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTG
TTGGCGGCCTAGCATTGTTCGACGCAGGTTGGCTTGCCATCCTATTCTTG
ATTGAAGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTT
AGCACTTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGG
CTGTCTCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCA
ACTAAAAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAA
CCATTGCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAA
CAATGATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAA
CGCTCTTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATC
TTGTTCCACAGTGCGGATTTTAAAGTCAACTCCAATGGTGCTAATGT
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