CN192062

Overview
NameCN192062
Unique NameCN192062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 5.724e-13
Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = -3
Query:  330 LRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 542
            ++ P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W++A   RT+LLS+Q+LL    P+ P ++  A
Sbjct:   60 IKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 131          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 5.724e-13
Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = -3
Query:  330 LRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 542
            ++ P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W++A   RT+LLS+Q+LL    P+ P ++  A
Sbjct:   60 IKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 131          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 5.724e-13
Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = -3
Query:  330 LRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 542
            ++ P  YPF PP+V+F T  +HPN+    G ICLDIL+D+W++A   RT+LLS+Q+LL    P+ P ++  A
Sbjct:   60 IKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 131          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.724e-13
Identity = 33/84 (39.29%), Postives = 54/84 (64.29%), Query Frame = -3
Query:  297 LRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAA-LLNNKEDYRK 542
            +  P++YPFKPP+++F+T  +HPN+    G ICLDIL++ WS     ++ L+S+Q+LL  P P  P ++  A   L ++E + K
Sbjct:   56 IEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 139          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.724e-13
Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = -3
Query:  267 GNYV*GFYHTNFSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQYFAGE 581
            GN+V  F  +N        YP + P+VK +T  +HPN+D  GN+CL+IL++ W    +  T++  +  L  EPN E PLN  AAA+L +N + +   V++    G+
Sbjct:   77 GNFVFSFQVSNM-------YPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVRRAMMGGQ 175          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.724e-13
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = -3
Query:  315 GFYHTN---FSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 566
            G+YH     F+ +    YP + P+VK +T  +HPN+D  GN+CL+IL++ W    +  T++  +  L  EPN E PLN  AAA+L +
Sbjct:   71 GYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRD 157          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.764e-13
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = -3
Query:  345 PLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL----QDKWSSAYDCRTILLSIQSLLGEPNPESPL 533
            P  YPF+PPQV+F T  +HPN+D  G ICLDIL    +  W  + +  T+L SIQ L+ EPNP+ PL
Sbjct:   58 PERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPL 124          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.275e-12
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  315 YV*GFYHTNFSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 575
            Y  G +   FS+  P  YP +PPQV+F T  FHPNV  + G ICLDIL++ WS A+  +++  +I +L+  P P+SPLN  +  LL +
Sbjct:   49 YEGGVFQLAFSV--PEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRS 134          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.666e-12
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = -3
Query:  345 PLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL----QDKWSSAYDCRTILLSIQSLLGEPNPESPL 533
            P  YPF+PPQ++F T  +HPN+D  G ICLD+L    +  W  + +  T+L SIQ L+ EPNP+ PL
Sbjct:   58 PERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPL 124          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.666e-12
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = -3
Query:  282 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-------NNKEDYRKMVQKQ 542
            L+FP+DYP+ PP  +F T  +HPN+ + G++C+ IL              ++W+   + RTILLS+ SLL EPN  SP N  A+ +            +Y  +++KQ
Sbjct:   62 LKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQ 168          
The following BLAST results are available for this feature:
BLAST of CN192062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBE2K_MOUSE5.724e-1345.83Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN5.724e-1345.83Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN5.724e-1345.83Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBC1_YEAST5.724e-1339.29Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UB12L_ARATH5.724e-1335.85Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
RCE1_ARATH5.724e-1339.08NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UBE2T_MOUSE9.764e-1350.75Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBC21_ARATH1.275e-1243.18Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBE2T_HUMAN1.666e-1247.76Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UB2R1_MOUSE1.666e-1234.58Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006E16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192062 ID=CN192062; Name=CN192062; organism=Citrus sinensis; type=EST; length=637bp
GCCCTTTCATTTGATTCAAACAAAATTACAACACCGTGTAAACTTTATTT
TGCTATTACATGAGAAATTATCGAGAGCCTGAGTAACCTTCCTTTGGGTA
TAATGTAAATAACTGTACTGACAATGATGAGACTTATGTAGATCAGTTTT
CATTGAAACAAGTTCCAAACTGAAACAAGCCCTTCCCCTTGAGCTTTACA
GAGAAATAATGTGGAAGCCTAACATCCGATTTTGTATCTGTTTTGCTGTT
CAAATTAGCTCTCAAATTCTCCAGCAAAGTACTGTTTCTGGACCATTTTT
CTGTAATCTTCCTTATTGTTCAACAGAGCTGCAGCATAGCTGTTGAGAGG
GCTCTCTGGATTAGGCTCTCCCAGTAAACTTTGAATGGACAAAAGAATCG
TTCTGCAATCATACGCTGAAGACCACTTGTCCTGAAGGATGTCTAGGCAT
ATGTTGCCATACTGATCAACATTTGGATGGAAGCACATAGTTTCAAACTT
GACTTGGGGTGGCTTGAAAGGATAATCCAGAGGAAAACGCAAAGAAAAGT
TTGTATGATAAAACCCTCATACATAGTTCCCTTTCCACCCTCGATTGTGC
CAATCAAGTGAAAATGCTCTCGCCTTCAGGAAAGGCC
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