CN192062

Overview
NameCN192062
Unique NameCN192062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.666e-12
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = -3
Query:  282 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-------NNKEDYRKMVQKQ 542
            L+FP+DYP+ PP  +F T  +HPN+ + G++C+ IL              ++W+   + RTILLS+ SLL EPN  SP N  A+ +            +Y  +++KQ
Sbjct:   62 LKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQ 168          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.710e-12
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = -3
Query:  345 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL----QDKWSSAYDCRTILLSIQSLLGEPNPESPL 542
            +  P  YPF+PPQ++F T  +HPN+D  G ICLD+L    +  W  + +  T+L  IQ L+ EPNP+ PL
Sbjct:   55 VHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPL 124          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.710e-12
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  285 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQK 545
            +L+FP DYP  PP +KFE   FHPNV + G +C+ IL              ++WS       ILLS+ S+L EPN ES  N  A  +   ++E+Y ++V++
Sbjct:   58 TLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRR 158          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = -3
Query:  285 PLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQK 533
            P  YPFK P + F    FHPN+D+  G +CLD++   W++ YD   I  S +  LL  PNP  PLN  AAA+ L+  E+Y++ +++
Sbjct:   58 PDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKE 143          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = -3
Query:  285 PLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQK 533
            P  YPFK P + F    FHPN+D+  G +CLD++   W++ YD   I  S +  LL  PNP  PLN  AAA+ L+  E+Y++ +++
Sbjct:   58 PDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKE 143          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = -3
Query:  285 PLDYPFKPPQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQK 533
            P  YPFK P + F    FHPN+D+  G +CLD++   W++ YD   I  S +  LL  PNP  PLN  AAA+ L+  E+Y++ +++
Sbjct:   58 PDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKE 143          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = -3
Query:  282 FPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDK--------WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQ 536
            FP +YP+ PP++ F +  +HPN+   G +C+ IL           WS A    TILLS+ SLL EPNP+SP N  AA      + YRK++ K+
Sbjct:   56 FPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAA------KSYRKLMHKE 142          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = -3
Query:  315 PLDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 533
            P +YP +PP +KF T  FHPN+  + G ICLD+L+  WS+ Y  +++  SI +LL  P  +SPLN  A  L+ N
Sbjct:   57 PTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDAGNLIRN 130          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 43/106 (40.57%), Postives = 56/106 (52.83%), Query Frame = -3
Query:  279 NYV*GFYHTNFSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYA-AALLNNKEDYRKMV---QKQY 578
            N+  G Y    ++ +P +YP KPP+VKF    +HPNV   G ICL IL +   W  A   + I+L +Q LL  PNP SP    A  +   NK +Y K V    KQY
Sbjct:   52 NWAGGVYP--ITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQY 155          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.846e-12
Identity = 41/94 (43.62%), Postives = 52/94 (55.32%), Query Frame = -3
Query:  282 FSLR--FPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQ 548
            F LR  F  DYP  PP+ KFE   FHPNV   G +CL IL++   W  A   + ILL IQ LL EPN + P  + A  +   N+ +Y K V+ Q
Sbjct:   58 FKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ 151          
The following BLAST results are available for this feature:
BLAST of CN192062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UB2R1_HUMAN1.666e-1234.58Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBE2T_BOVIN3.710e-1244.29Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBC7_SCHPO3.710e-1237.62Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBE2H_MOUSE4.846e-1240.70Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN4.846e-1240.70Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN4.846e-1240.70Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBC_ASFWA4.846e-1240.86Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBCX_DICDI4.846e-1244.59Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBC9_YEAST4.846e-1240.57SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UBC9_XENTR4.846e-1243.62SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006E16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192062 ID=CN192062; Name=CN192062; organism=Citrus sinensis; type=EST; length=637bp
GCCCTTTCATTTGATTCAAACAAAATTACAACACCGTGTAAACTTTATTT
TGCTATTACATGAGAAATTATCGAGAGCCTGAGTAACCTTCCTTTGGGTA
TAATGTAAATAACTGTACTGACAATGATGAGACTTATGTAGATCAGTTTT
CATTGAAACAAGTTCCAAACTGAAACAAGCCCTTCCCCTTGAGCTTTACA
GAGAAATAATGTGGAAGCCTAACATCCGATTTTGTATCTGTTTTGCTGTT
CAAATTAGCTCTCAAATTCTCCAGCAAAGTACTGTTTCTGGACCATTTTT
CTGTAATCTTCCTTATTGTTCAACAGAGCTGCAGCATAGCTGTTGAGAGG
GCTCTCTGGATTAGGCTCTCCCAGTAAACTTTGAATGGACAAAAGAATCG
TTCTGCAATCATACGCTGAAGACCACTTGTCCTGAAGGATGTCTAGGCAT
ATGTTGCCATACTGATCAACATTTGGATGGAAGCACATAGTTTCAAACTT
GACTTGGGGTGGCTTGAAAGGATAATCCAGAGGAAAACGCAAAGAAAAGT
TTGTATGATAAAACCCTCATACATAGTTCCCTTTCCACCCTCGATTGTGC
CAATCAAGTGAAAATGCTCTCGCCTTCAGGAAAGGCC
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