CN192062

Overview
NameCN192062
Unique NameCN192062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.102e-11
Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = -3
Query:  279 SLRFPLDYPFKPPQVKFETMCFHPNVDQY-GNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 545
            ++ F  +Y + PP VKF T+ FHPNVD + G  C+D L +  KW++ Y   +ILL++Q +L  P  E+P+N  AA +L   E   + + K +
Sbjct:   56 TIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILTKDESLYRTILKLF 147          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 35/95 (36.84%), Postives = 53/95 (55.79%), Query Frame = -3
Query:  282 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD--------KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQ 542
            + FP +YP++PP++ F +  +HPN+   G +C+ IL           WS A    T+LLS+ SL  EPN +SP N  AA      + YRK++ K+
Sbjct:   54 ITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGMTWSPAQKIETVLLSVISLFNEPNTDSPANVDAA------KSYRKLMHKE 142          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 36/100 (36.00%), Postives = 50/100 (50.00%), Query Frame = -3
Query:  282 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQ 542
            L FPLDYP  PP+++F    FHPN+   G +C+ IL              ++WS       ILLS+ S+L EPN ES  N  A+ +  +  +    V KQ
Sbjct:   58 LSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQ 157          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC8_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC8 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = -3
Query:  285 LRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTIL-LSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQK 542
            +  P +YP+K P + F    FHPN+D   G+ICLD++   WS  YD   I+   I  LL EPN   PLN+ AA L L +K+ Y + +++
Sbjct:   53 VELPDNYPYKSPSIGFVNKIFHPNIDIASGSICLDVINSTWSPLYDLINIVEWMIPGLLKEPNGSDPLNNEAATLQLRDKKLYEEKIKE 141          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 35/100 (35.00%), Postives = 50/100 (50.00%), Query Frame = -3
Query:  282 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQ 542
            L FPLDYP  PP+++F    FHPN+   G +C+ IL              ++WS       ILLS+ S+L EPN ES  N  A+ +  +  +    + KQ
Sbjct:   58 LSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 157          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 35/100 (35.00%), Postives = 50/100 (50.00%), Query Frame = -3
Query:  282 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQ 542
            L FPLDYP  PP+++F    FHPN+   G +C+ IL              ++WS       ILLS+ S+L EPN ES  N  A+ +  +  +    + KQ
Sbjct:   58 LSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 157          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 35/100 (35.00%), Postives = 50/100 (50.00%), Query Frame = -3
Query:  282 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQ 542
            L FPLDYP  PP+++F    FHPN+   G +C+ IL              ++WS       ILLS+ S+L EPN ES  N  A+ +  +  +    + KQ
Sbjct:   58 LSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 157          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 36/93 (38.71%), Postives = 51/93 (54.84%), Query Frame = -3
Query:  282 FPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQD--------KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQ 536
            FP +YP++PP++ F +  +HPN+   G +C+ IL           WS      TILLS+ SLL EPN +SP N  AA      + YR+ V K+
Sbjct:   56 FPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGMTWSPVQKIDTILLSVISLLNEPNTDSPANVDAA------KSYRRFVHKE 142          
The following BLAST results are available for this feature:
BLAST of CN192062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBE2U_MACFA4.102e-1138.04Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]
UBC_ASFK55.358e-1136.84Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UB2G2_BOVIN5.358e-1136.00Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBC8_YEAST6.997e-1140.45Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UB2G2_PONAB6.997e-1135.00Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE6.997e-1135.00Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN6.997e-1135.00Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UBC_ASFP49.139e-1138.71Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006E16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192062 ID=CN192062; Name=CN192062; organism=Citrus sinensis; type=EST; length=637bp
GCCCTTTCATTTGATTCAAACAAAATTACAACACCGTGTAAACTTTATTT
TGCTATTACATGAGAAATTATCGAGAGCCTGAGTAACCTTCCTTTGGGTA
TAATGTAAATAACTGTACTGACAATGATGAGACTTATGTAGATCAGTTTT
CATTGAAACAAGTTCCAAACTGAAACAAGCCCTTCCCCTTGAGCTTTACA
GAGAAATAATGTGGAAGCCTAACATCCGATTTTGTATCTGTTTTGCTGTT
CAAATTAGCTCTCAAATTCTCCAGCAAAGTACTGTTTCTGGACCATTTTT
CTGTAATCTTCCTTATTGTTCAACAGAGCTGCAGCATAGCTGTTGAGAGG
GCTCTCTGGATTAGGCTCTCCCAGTAAACTTTGAATGGACAAAAGAATCG
TTCTGCAATCATACGCTGAAGACCACTTGTCCTGAAGGATGTCTAGGCAT
ATGTTGCCATACTGATCAACATTTGGATGGAAGCACATAGTTTCAAACTT
GACTTGGGGTGGCTTGAAAGGATAATCCAGAGGAAAACGCAAAGAAAAGT
TTGTATGATAAAACCCTCATACATAGTTCCCTTTCCACCCTCGATTGTGC
CAATCAAGTGAAAATGCTCTCGCCTTCAGGAAAGGCC
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