CN192062

Overview
NameCN192062
Unique NameCN192062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.247e-20
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = -3
Query:  291 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 542
            + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:   57 IEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.837e-19
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = -3
Query:  285 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQK 545
            +L+F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS AA + + NK +Y + V++
Sbjct:   56 TLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVRE 143          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.399e-19
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = -3
Query:  285 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQK 545
            SL+F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS AA + + +K +Y + V++
Sbjct:   56 SLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVRE 143          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.134e-19
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = -3
Query:  288 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQ 545
            ++ F  +YP KPP V+F +  FHPNV   G ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS AA L   N+ +Y K V+
Sbjct:   56 TIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVK 142          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.093e-19
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = -3
Query:  288 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQ 545
            SL+F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS AA + + +K +Y + V+
Sbjct:   56 SLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVR 142          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.345e-19
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = -3
Query:  291 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMV 545
            +L F  DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YD   +L SIQSLL +PNP+SP N+ AA L + NK +Y + V
Sbjct:   56 TLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRKV 141          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.653e-18
Identity = 47/87 (54.02%), Postives = 57/87 (65.52%), Query Frame = -3
Query:  285 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 542
            L F  DYP KPP VKF +  FHPNV   G ICLDILQ++W+  YD  +IL SIQSL  +PNP SP N  AA L  ++K  Y K V++
Sbjct:   57 LEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKE 143          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 47/88 (53.41%), Postives = 59/88 (67.05%), Query Frame = -3
Query:  285 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 545
            SL+F  +YP   P VKF +  FHPNV   G+ICLDILQ++WS  YD   IL SIQSLL +PNP SP NS +A L   NK +Y + V++
Sbjct:   56 SLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKE 143          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = -3
Query:  345 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 545
            ++ FP DYPFKPP+V F T  FHPN++  GNICLDIL+D+WS A     +LLSI SLL +PNP+ PL
Sbjct:   53 NIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPL 119          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.719e-18
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = -3
Query:  285 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 542
            L F  +YP KPP VKF +  FHPNV   G ICLDILQ++W+  YD  +IL SIQSL  +PNP SP N  AA L  ++K  Y K V++
Sbjct:   57 LEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKE 143          
The following BLAST results are available for this feature:
BLAST of CN192062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBE2B_BOVIN8.247e-2057.65Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC2_WHEAT1.837e-1953.41Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_ARATH2.399e-1953.41Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBCD6_DROME3.134e-1954.02Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC1_ARATH4.093e-1954.02Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC3_ARATH5.345e-1953.49Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC2_CANGA2.653e-1854.02Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC2_DICDI5.910e-1853.41Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC29_ARATH5.910e-1859.70Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC2_YEAST7.719e-1852.87Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0006E16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192062 ID=CN192062; Name=CN192062; organism=Citrus sinensis; type=EST; length=637bp
GCCCTTTCATTTGATTCAAACAAAATTACAACACCGTGTAAACTTTATTT
TGCTATTACATGAGAAATTATCGAGAGCCTGAGTAACCTTCCTTTGGGTA
TAATGTAAATAACTGTACTGACAATGATGAGACTTATGTAGATCAGTTTT
CATTGAAACAAGTTCCAAACTGAAACAAGCCCTTCCCCTTGAGCTTTACA
GAGAAATAATGTGGAAGCCTAACATCCGATTTTGTATCTGTTTTGCTGTT
CAAATTAGCTCTCAAATTCTCCAGCAAAGTACTGTTTCTGGACCATTTTT
CTGTAATCTTCCTTATTGTTCAACAGAGCTGCAGCATAGCTGTTGAGAGG
GCTCTCTGGATTAGGCTCTCCCAGTAAACTTTGAATGGACAAAAGAATCG
TTCTGCAATCATACGCTGAAGACCACTTGTCCTGAAGGATGTCTAGGCAT
ATGTTGCCATACTGATCAACATTTGGATGGAAGCACATAGTTTCAAACTT
GACTTGGGGTGGCTTGAAAGGATAATCCAGAGGAAAACGCAAAGAAAAGT
TTGTATGATAAAACCCTCATACATAGTTCCCTTTCCACCCTCGATTGTGC
CAATCAAGTGAAAATGCTCTCGCCTTCAGGAAAGGCC
back to top