CN192062

Overview
NameCN192062
Unique NameCN192062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.246e-17
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = -3
Query:  285 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 545
            +L F   YP KPP V+F +  FHPN+   G +CLDILQ++WS  YD   IL S+QSLL +PNP SP N  AA L   N ++Y + V+K
Sbjct:   56 TLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKK 143          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.933e-17
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = -3
Query:  345 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 545
            S+ FP DYPFKPP+V F+T  +HPN++  G+ICLDIL+++WS A     +LLSI SLL +PNP+ PL
Sbjct:   53 SIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = -3
Query:  345 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 545
            S+ FP DYPFKPP++ F T  +HPN++  GNICLDIL+D+WS A     +LLSI SLL + NP+ PL
Sbjct:   54 SIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPL 120          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = -3
Query:  288 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQ 542
            L+F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD   IL S+QSLL +PN  SP N  A+ L  ++++ Y K V+
Sbjct:   57 LQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVR 142          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = -3
Query:  345 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 545
            ++ FP DYPFKPP+V F T  FHPNV+  G+ICLDIL+++WS A     +LLSI SLL +PNP+ PL
Sbjct:   53 TIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = -3
Query:  345 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 545
            ++ FP DYPFKPP+V F T  +HPN++  G+ICLDIL+D+WS A     +LLSI S+L +PNP+ PL
Sbjct:   53 AIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPL 119          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = -3
Query:  345 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 545
            ++ FP DYPFKPP+V F T  +HPN++  G+ICLDIL+D+WS A     +LLSI S+L +PNP+ PL
Sbjct:   53 AIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPL 119          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  285 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQK 545
            S+ F  DYPFKPP+V F+T  +HPN+D  G+ICLDIL+++WS A     +LLSI SLL +PNP  PL    A L   +K  Y    QK
Sbjct:   54 SIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQK 141          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = -3
Query:  279 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 545
            ++ FP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +     D    + +++
Sbjct:   53 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 141          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = -3
Query:  279 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 545
            ++ FP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +     D    + +++
Sbjct:   53 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 141          
The following BLAST results are available for this feature:
BLAST of CN192062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBC2_CRYNE2.246e-1750.00Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC11_ARATH2.933e-1756.72Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC4_YEAST3.831e-1756.72Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC2_YARLI3.831e-1750.00Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC28_ARATH3.831e-1758.21Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC1_MAGGR3.831e-1755.22Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC1_COLGL3.831e-1755.22Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC12_ARATH3.831e-1750.00Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UB2D3_RAT3.831e-1743.82Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB3.831e-1743.82Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006E16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192062 ID=CN192062; Name=CN192062; organism=Citrus sinensis; type=EST; length=637bp
GCCCTTTCATTTGATTCAAACAAAATTACAACACCGTGTAAACTTTATTT
TGCTATTACATGAGAAATTATCGAGAGCCTGAGTAACCTTCCTTTGGGTA
TAATGTAAATAACTGTACTGACAATGATGAGACTTATGTAGATCAGTTTT
CATTGAAACAAGTTCCAAACTGAAACAAGCCCTTCCCCTTGAGCTTTACA
GAGAAATAATGTGGAAGCCTAACATCCGATTTTGTATCTGTTTTGCTGTT
CAAATTAGCTCTCAAATTCTCCAGCAAAGTACTGTTTCTGGACCATTTTT
CTGTAATCTTCCTTATTGTTCAACAGAGCTGCAGCATAGCTGTTGAGAGG
GCTCTCTGGATTAGGCTCTCCCAGTAAACTTTGAATGGACAAAAGAATCG
TTCTGCAATCATACGCTGAAGACCACTTGTCCTGAAGGATGTCTAGGCAT
ATGTTGCCATACTGATCAACATTTGGATGGAAGCACATAGTTTCAAACTT
GACTTGGGGTGGCTTGAAAGGATAATCCAGAGGAAAACGCAAAGAAAAGT
TTGTATGATAAAACCCTCATACATAGTTCCCTTTCCACCCTCGATTGTGC
CAATCAAGTGAAAATGCTCTCGCCTTCAGGAAAGGCC
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