CN192062

Overview
NameCN192062
Unique NameCN192062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  345 NFSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 551
            N  L    DYP   P+V+F T  +HPN+D+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL
Sbjct:   53 NLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = -3
Query:  345 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 542
            L  P +YP   P+V+F T  +HPNVD+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL
Sbjct:   56 LFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = -3
Query:  330 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 542
            L  P +YP   P+V+F T  +HPN+D+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL+   A
Sbjct:   58 LFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 128          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = -3
Query:  330 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAA 542
            L  P +YP   P+V+F T  +HPN+D+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL+   A
Sbjct:   58 LFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 128          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = -3
Query:  315 NFSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 551
            N S++FP DYPFKPP+  F+T  +HPN++  G+IC++IL+DKW+ A     +LLSI  LL +PNP+ PL      L  N
Sbjct:   57 NLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKN 135          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = -3
Query:  285 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 542
            + F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD   IL SIQSLL +PN  SP N  A+ L  +N+++Y K V++
Sbjct:   57 MHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRE 143          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = -3
Query:  285 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 545
            ++ FP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct:   53 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLARE 140          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = -3
Query:  285 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 542
            + F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD   IL SIQSLL +PN  SP N  A+ L  +N+++Y K V++
Sbjct:   57 MHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRE 143          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = -3
Query:  345 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 542
            L  P +YP   P+V+F T  +HPNVD+ G ICLDIL+DKWS A   RT+LLSIQ+LL  PNP+ PL
Sbjct:   56 LFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = -3
Query:  345 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 545
            ++ FP DYPFKPP+V F T  +HPN++  G+ICLDIL+++WS A     +LLSI SLL +PNP+ PL
Sbjct:   53 TIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPL 119          
The following BLAST results are available for this feature:
BLAST of CN192062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBE2N_DICDI8.534e-1756.52Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBE2N_BOVIN8.534e-1759.09Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC36_ARATH8.534e-1754.93Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH8.534e-1754.93Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC31_ARATH8.534e-1748.10Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC2_EMENI8.534e-1750.57Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_CAEEL8.534e-1745.45Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC2_ASPFU8.534e-1750.57Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBE2N_MACFA1.115e-1659.09Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBC30_ARATH1.115e-1655.22Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006E16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192062 ID=CN192062; Name=CN192062; organism=Citrus sinensis; type=EST; length=637bp
GCCCTTTCATTTGATTCAAACAAAATTACAACACCGTGTAAACTTTATTT
TGCTATTACATGAGAAATTATCGAGAGCCTGAGTAACCTTCCTTTGGGTA
TAATGTAAATAACTGTACTGACAATGATGAGACTTATGTAGATCAGTTTT
CATTGAAACAAGTTCCAAACTGAAACAAGCCCTTCCCCTTGAGCTTTACA
GAGAAATAATGTGGAAGCCTAACATCCGATTTTGTATCTGTTTTGCTGTT
CAAATTAGCTCTCAAATTCTCCAGCAAAGTACTGTTTCTGGACCATTTTT
CTGTAATCTTCCTTATTGTTCAACAGAGCTGCAGCATAGCTGTTGAGAGG
GCTCTCTGGATTAGGCTCTCCCAGTAAACTTTGAATGGACAAAAGAATCG
TTCTGCAATCATACGCTGAAGACCACTTGTCCTGAAGGATGTCTAGGCAT
ATGTTGCCATACTGATCAACATTTGGATGGAAGCACATAGTTTCAAACTT
GACTTGGGGTGGCTTGAAAGGATAATCCAGAGGAAAACGCAAAGAAAAGT
TTGTATGATAAAACCCTCATACATAGTTCCCTTTCCACCCTCGATTGTGC
CAATCAAGTGAAAATGCTCTCGCCTTCAGGAAAGGCC
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