CN192062

Overview
NameCN192062
Unique NameCN192062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = -3
Query:  282 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQ 542
            L F   YP KPPQVKF +  FHPNV   G +CLDILQ++WS  YD  +IL S+QSLL +PN  SP N  AA   N  +D+R +  K+
Sbjct:   57 LSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAA---NLYKDHRSLYVKR 140          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = -3
Query:  285 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 545
            ++ FP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A     ++E Y ++ ++
Sbjct:   53 TIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLARE 140          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = -3
Query:  297 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRK 545
            ++ FP DYPFKPP++ F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A    ++KE Y +
Sbjct:   53 TVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = -3
Query:  297 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRK 545
            ++ FP DYPFKPP++ F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A    ++KE Y +
Sbjct:   53 TVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = -3
Query:  297 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRK 545
            ++ FP DYPFKPP++ F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A    ++KE Y +
Sbjct:   53 TVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -3
Query:  306 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 545
            ++ FP +YPFKPP+V+F T  +HPNV+  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +     D
Sbjct:   53 TIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRD 132          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -3
Query:  306 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKED 545
            ++ FP +YPFKPP+V+F T  +HPNV+  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +     D
Sbjct:   53 TIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRD 132          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = -3
Query:  285 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 542
            L+F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD  +IL SIQSLL +PN  SP N  AA L  +++  Y K V++
Sbjct:   57 LQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRE 143          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  270 GFYHTN---FSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQYFAG 566
            GFY      FS +    YP  PP+VK ETM +HPN+D  GN+CL+IL++ W       +I+  +Q L  EPNPE PLN  AA +L NN+  + + VQ+    G
Sbjct:   69 GFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 171          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.456e-16
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  270 GFYHTN---FSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQYFAG 566
            GFY      FS +    YP  PP+VK ETM +HPN+D  GN+CL+IL++ W       +I+  +Q L  EPNPE PLN  AA +L NN+  + + VQ+    G
Sbjct:   69 GFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 171          
The following BLAST results are available for this feature:
BLAST of CN192062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBC2_CANAL1.115e-1651.72Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UB2D4_HUMAN1.115e-1645.45Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UB2D1_MOUSE1.115e-1647.62Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN1.115e-1647.62Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN1.115e-1647.62Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
U2D2B_RAT1.115e-1648.75Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE1.115e-1648.75Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC2_DEBHA1.456e-1651.72Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC12_XENTR1.456e-1642.72NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA1.456e-1642.72NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006E16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192062 ID=CN192062; Name=CN192062; organism=Citrus sinensis; type=EST; length=637bp
GCCCTTTCATTTGATTCAAACAAAATTACAACACCGTGTAAACTTTATTT
TGCTATTACATGAGAAATTATCGAGAGCCTGAGTAACCTTCCTTTGGGTA
TAATGTAAATAACTGTACTGACAATGATGAGACTTATGTAGATCAGTTTT
CATTGAAACAAGTTCCAAACTGAAACAAGCCCTTCCCCTTGAGCTTTACA
GAGAAATAATGTGGAAGCCTAACATCCGATTTTGTATCTGTTTTGCTGTT
CAAATTAGCTCTCAAATTCTCCAGCAAAGTACTGTTTCTGGACCATTTTT
CTGTAATCTTCCTTATTGTTCAACAGAGCTGCAGCATAGCTGTTGAGAGG
GCTCTCTGGATTAGGCTCTCCCAGTAAACTTTGAATGGACAAAAGAATCG
TTCTGCAATCATACGCTGAAGACCACTTGTCCTGAAGGATGTCTAGGCAT
ATGTTGCCATACTGATCAACATTTGGATGGAAGCACATAGTTTCAAACTT
GACTTGGGGTGGCTTGAAAGGATAATCCAGAGGAAAACGCAAAGAAAAGT
TTGTATGATAAAACCCTCATACATAGTTCCCTTTCCACCCTCGATTGTGC
CAATCAAGTGAAAATGCTCTCGCCTTCAGGAAAGGCC
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