CN192062

Overview
NameCN192062
Unique NameCN192062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.483e-16
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = -3
Query:  279 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 545
            ++ FP DYPFKPP+V F T  +HPN++   +ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +     D    + +++
Sbjct:   53 TIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 141          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  309 YV*GFYHTNFSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE 575
            Y  G +H    L  P +YP  PP V+F T  +HPNVD+ G ICL  L+  WS A   RT+LLSIQ+L+G PNP+ PL++  A +    E
Sbjct:   46 YEGGKFHLELFL--PDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENE 132          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.532e-16
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = -3
Query:  309 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKE 542
            L  P DYP + P+V+F T  +HPN+D+ G ICLD+L+  WS A   RT+LLSIQ+LL  PNP  PL N  A   + N++
Sbjct:   56 LYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQ 134          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.224e-16
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = -3
Query:  297 SLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRK 545
            S+ FP DYP KPP++   T  +HPN++  GNICLDIL+D+WS A     +LLSI SLL + NP+ PL    A +   K+D +K
Sbjct:   53 SIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIY--KQDRKK 133          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 7.224e-16
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = -3
Query:  285 LRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 542
            + F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD   +L SIQSLL +PN  S  N  A+ L  +N+++Y K V++
Sbjct:   57 MHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRE 143          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = -3
Query:  303 RGWKGNYV*GFYHTNFSLRFPLDYPFKPPQVKFETMCFHPNVD-QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDY 593
            RG +G    G Y     +  P+DYPF+PP++ F+T  +HPNV  Q G ICLDIL+D+WS  Y  ++ L+S+QSLL  P P +P ++  A + L N + +
Sbjct:   41 RGPEGTPYEGGYFV-VDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQF 138          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  270 GFYHTN---FSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQYFAG 566
            GFY      F+ R   +YP +PP+VK  T  +HPN+D  GN+CL+IL++ W+   +  +I+  +Q L  EPNPE PLN  AA +L  N+  +   V+K    G
Sbjct:   66 GFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKKAMRGG 168          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 43/98 (43.88%), Postives = 60/98 (61.22%), Query Frame = -3
Query:  288 YV*GFYHTNFSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQ 575
            Y  G +H  FSL+FPLDYPF+PP ++F T  +HPN D  GN+CL IL Q  +  +   R++L  I  LL EPNP+ PL  S A    N++  + K+ +
Sbjct:   51 YAGGKFH--FSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIAR 146          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = -3
Query:  261 GFYH---TNFSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQKQYFAGEFE 566
            G+Y+    NF+L F   YP +PP+V      FHPN+D  GN+CL+IL++ WS A D ++I+  +  L  EPNP  PLN  AA LL   ++++ + V+     G  E
Sbjct:   73 GYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSIE 178          
BLAST of CN192062 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.362e-14
Identity = 34/94 (36.17%), Postives = 58/94 (61.70%), Query Frame = -3
Query:  270 FSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAAL-LNNKEDYRKMVQKQYFAG 548
            F++  P  YP+ PP+V  +T+ +HPN+D  G++CL+IL+  W    +  T++  + +L  EPNP+ PLN  AA L ++NK+ +   V++    G
Sbjct:  126 FTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVRQSLRGG 219          
The following BLAST results are available for this feature:
BLAST of CN192062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UB2D3_BOVIN2.483e-1642.70Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC13_SCHPO4.235e-1646.07Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC13_YEAST5.532e-1649.37Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC4_CANAL7.224e-1648.19Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC2_NEUCR7.224e-1648.28Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC1_SCHPO2.102e-1542.42Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC12_DROME2.102e-1539.81NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC14_SCHPO4.683e-1543.88Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC12_YEAST1.362e-1439.62NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBC12_DICDI1.362e-1436.17NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006E16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192062 ID=CN192062; Name=CN192062; organism=Citrus sinensis; type=EST; length=637bp
GCCCTTTCATTTGATTCAAACAAAATTACAACACCGTGTAAACTTTATTT
TGCTATTACATGAGAAATTATCGAGAGCCTGAGTAACCTTCCTTTGGGTA
TAATGTAAATAACTGTACTGACAATGATGAGACTTATGTAGATCAGTTTT
CATTGAAACAAGTTCCAAACTGAAACAAGCCCTTCCCCTTGAGCTTTACA
GAGAAATAATGTGGAAGCCTAACATCCGATTTTGTATCTGTTTTGCTGTT
CAAATTAGCTCTCAAATTCTCCAGCAAAGTACTGTTTCTGGACCATTTTT
CTGTAATCTTCCTTATTGTTCAACAGAGCTGCAGCATAGCTGTTGAGAGG
GCTCTCTGGATTAGGCTCTCCCAGTAAACTTTGAATGGACAAAAGAATCG
TTCTGCAATCATACGCTGAAGACCACTTGTCCTGAAGGATGTCTAGGCAT
ATGTTGCCATACTGATCAACATTTGGATGGAAGCACATAGTTTCAAACTT
GACTTGGGGTGGCTTGAAAGGATAATCCAGAGGAAAACGCAAAGAAAAGT
TTGTATGATAAAACCCTCATACATAGTTCCCTTTCCACCCTCGATTGTGC
CAATCAAGTGAAAATGCTCTCGCCTTCAGGAAAGGCC
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