CN192054

Overview
NameCN192054
Unique NameCN192054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_SYNJB (Adenine phosphoribosyltransferase OS=Synechococcus sp. GN=apt PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.105e-14
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDK-NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            + + IR++PDFP+PGI+F+D+T LL D   FR  I+          ++  V GIE+RGFI G  +A  +G  FVP+RKP KLP  V+S
Sbjct:    3 LRALIRLVPDFPRPGILFRDMTPLLQDPAGFRAAIEQLAAGTTGMGSLDYVVGIESRGFILGAALAQHLGLGFVPVRKPGKLPPPVLS 90          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_RHORT (Adenine phosphoribosyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=apt PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.105e-14
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   64 IRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVI 309
            IR +PDFPKPGI+F DI+TLL D  A++ T+    +    +   V+AGIE+RGF+   P+AL +G  FV +RK  KLPG  +
Sbjct:    7 IREVPDFPKPGILFYDISTLLADPDAWQVTMGRMAKVVAPRLPDVLAGIESRGFLVAAPLALKLGLGFVMVRKKGKLPGATV 88          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_PSEU2 (Adenine phosphoribosyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=apt PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.105e-14
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   46 AGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            +   S IR + DFPKPG++F+DIT L    KA R  ID FV+RY D   S +  ++ARGF+ G  +A  +    V  RK  KLP +V+S
Sbjct:    6 SNFKSLIRPVVDFPKPGVVFRDITPLFQSPKATRQVIDSFVQRYIDAEFSHIGVMDARGFLIGSVVAYQLNKPLVLFRKQGKLPADVLS 94          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_MUSSI (Adenine phosphoribosyltransferase OS=Mus spicilegus GN=Aprt PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.105e-14
Identity = 39/96 (40.62%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   34 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKN---ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            +P +  ++  IR  PDFP PG++F+DI+ LL D  +FR +I L     K  +   I  +AG+++RGF+FGP +A  +G   V +RK  KLPG  +S
Sbjct:    3 EPELKLVARRIRSFPDFPIPGVLFRDISPLLKDPDSFRASIRLLASHLKSTHSGKIDYIAGLDSRGFLFGPSLAQELGVGCVLIRKQGKLPGPTVS 98          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_XANOR (Adenine phosphoribosyltransferase OS=Xanthomonas oryzae pv. oryzae GN=apt PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.443e-14
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1
Query:   55 SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVI 309
            S  IR I DFPKPGI+F+DIT LL D   F   +D   + ++   +  V GIEA GFI G  +A  +   FVP+RKP KLPG  +
Sbjct:   19 SERIRDIVDFPKPGIVFKDITPLLSDGPDFASALDEMAQPWRTTPLDAVLGIEALGFILGAALARELRTGFVPVRKPGKLPGRTL 103          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_XANOP (Adenine phosphoribosyltransferase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=apt PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.443e-14
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1
Query:   55 SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVI 309
            S  IR I DFPKPGI+F+DIT LL D   F   +D   + ++   +  V GIEA GFI G  +A  +   FVP+RKP KLPG  +
Sbjct:   19 SERIRDIVDFPKPGIVFKDITPLLSDGPDFASALDEMAQPWRTTPLDAVLGIEALGFILGAALARELRTGFVPVRKPGKLPGRTL 103          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_XANOM (Adenine phosphoribosyltransferase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=apt PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.443e-14
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1
Query:   55 SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVI 309
            S  IR I DFPKPGI+F+DIT LL D   F   +D   + ++   +  V GIEA GFI G  +A  +   FVP+RKP KLPG  +
Sbjct:   19 SERIRDIVDFPKPGIVFKDITPLLSDGPDFASALDEMAQPWRTTPLDAVLGIEALGFILGAALARELRTGFVPVRKPGKLPGRTL 103          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_XANC5 (Adenine phosphoribosyltransferase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=apt PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.443e-14
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1
Query:   55 SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVI 309
            S  IR I DFPK GI+F+DIT LL D   F   +D   + ++   +  V GIEARGFI G  +A  +   FVP+RKP KLPG  +
Sbjct:   19 SERIRDIADFPKQGIVFKDITPLLSDGPDFASALDEMAQPWRTTPLDAVLGIEARGFILGAALARELRTGFVPVRKPGKLPGRTL 103          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_STAES (Adenine phosphoribosyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=apt PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.443e-14
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   73 IPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVI 309
            + D+P  G+ F+DITT++ + +A+    D  VE  K+KNI +V G EARGFI G P+A ++G  F P+RK  KLP EVI
Sbjct:   10 VKDWPSAGVSFKDITTIMDNGEAYGYATDQIVEYAKEKNIDIVVGPEARGFIIGCPVAYSMGIGFAPVRKEGKLPREVI 88          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_STAEQ (Adenine phosphoribosyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=apt PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.443e-14
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   73 IPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVI 309
            + D+P  G+ F+DITT++ + +A+    D  VE  K+KNI +V G EARGFI G P+A ++G  F P+RK  KLP EVI
Sbjct:   10 VKDWPSAGVSFKDITTIMDNGEAYGYATDQIVEYAKEKNIDIVVGPEARGFIIGCPVAYSMGIGFAPVRKEGKLPREVI 88          
The following BLAST results are available for this feature:
BLAST of CN192054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_SYNJB1.105e-1445.45Adenine phosphoribosyltransferase OS=Synechococcus... [more]
APT_RHORT1.105e-1447.56Adenine phosphoribosyltransferase OS=Rhodospirillu... [more]
APT_PSEU21.105e-1443.82Adenine phosphoribosyltransferase OS=Pseudomonas s... [more]
APT_MUSSI1.105e-1440.63Adenine phosphoribosyltransferase OS=Mus spicilegu... [more]
APT_XANOR1.443e-1447.06Adenine phosphoribosyltransferase OS=Xanthomonas o... [more]
APT_XANOP1.443e-1447.06Adenine phosphoribosyltransferase OS=Xanthomonas o... [more]
APT_XANOM1.443e-1447.06Adenine phosphoribosyltransferase OS=Xanthomonas o... [more]
APT_XANC51.443e-1447.06Adenine phosphoribosyltransferase OS=Xanthomonas c... [more]
APT_STAES1.443e-1448.10Adenine phosphoribosyltransferase OS=Staphylococcu... [more]
APT_STAEQ1.443e-1448.10Adenine phosphoribosyltransferase OS=Staphylococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006E10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192054 ID=CN192054; Name=CN192054; organism=Citrus sinensis; type=EST; length=312bp
GAGGAAATGGCTTCAGCTGACGTAAAAGCACAAGACCCTCGAATCGCTGG
TATTTCCTCAGCAATTCGTGTCATCCCAGACTTCCCTAAACCAGGGATTA
TGTTTCAAGATATCACAACATTGCTTCTTGATACCAAGGCTTTTAGAGAT
ACTATTGATCTGTTCGTTGAGAGGTACAAGGACAAAAACATCTCTGTTGT
TGCAGGTATTGAAGCTAGGGGTTTTATATTTGGGCCTCCTATTGCATTGG
CTATTGGGGCAAAGTTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGGG
GAGGTCATTTCC
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