CN192054

Overview
NameCN192054
Unique NameCN192054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_SALPA (Adenine phosphoribosyltransferase OS=Salmonella paratyphi A GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.463e-23
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_SALNS (Adenine phosphoribosyltransferase OS=Salmonella newport (strain SL254) GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.463e-23
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_SALHS (Adenine phosphoribosyltransferase OS=Salmonella heidelberg (strain SL476) GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.463e-23
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_SALEP (Adenine phosphoribosyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.463e-23
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_SALDC (Adenine phosphoribosyltransferase OS=Salmonella dublin (strain CT_02021853) GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.463e-23
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_SALCH (Adenine phosphoribosyltransferase OS=Salmonella choleraesuis GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.463e-23
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_SALA4 (Adenine phosphoribosyltransferase OS=Salmonella agona (strain SL483) GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.463e-23
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_VIBHB (Adenine phosphoribosyltransferase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=apt PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.441e-23
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 1
Query:   43 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            I+ I S+I+ I D+PKPGI+F+D+T+LL D KA++ TI+L V+RYKD   + V G EARGF+FG P+AL +G  FVP+RKP KLP   I+
Sbjct:    6 ISLIRSSIKSIQDYPKPGILFRDVTSLLEDAKAYQATINLLVDRYKDMGFTKVVGTEARGFLFGAPLALELGVGFVPVRKPGKLPRPTIA 95          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_CLOBA (Adenine phosphoribosyltransferase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=apt PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.441e-23
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            +   IR+I  FPK GI F+DITTL+ D +  + +ID+FVE  KDK I ++ G EARGFIFG P+A A+GA FVP+RKP KLPGE IS
Sbjct:    3 LKEKIRIIDGFPKEGISFKDITTLIGDGEGLKASIDMFVEYLKDKEIDLIVGPEARGFIFGVPVAYALGAGFVPVRKPGKLPGETIS 89          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_CITK8 (Adenine phosphoribosyltransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=apt PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.441e-23
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIHDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97          
The following BLAST results are available for this feature:
BLAST of CN192054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_SALPA6.463e-2355.17Adenine phosphoribosyltransferase OS=Salmonella pa... [more]
APT_SALNS6.463e-2355.17Adenine phosphoribosyltransferase OS=Salmonella ne... [more]
APT_SALHS6.463e-2355.17Adenine phosphoribosyltransferase OS=Salmonella he... [more]
APT_SALEP6.463e-2355.17Adenine phosphoribosyltransferase OS=Salmonella en... [more]
APT_SALDC6.463e-2355.17Adenine phosphoribosyltransferase OS=Salmonella du... [more]
APT_SALCH6.463e-2355.17Adenine phosphoribosyltransferase OS=Salmonella ch... [more]
APT_SALA46.463e-2355.17Adenine phosphoribosyltransferase OS=Salmonella ag... [more]
APT_VIBHB8.441e-2355.56Adenine phosphoribosyltransferase OS=Vibrio harvey... [more]
APT_CLOBA8.441e-2358.62Adenine phosphoribosyltransferase OS=Clostridium b... [more]
APT_CITK88.441e-2355.17Adenine phosphoribosyltransferase OS=Citrobacter k... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006E10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192054 ID=CN192054; Name=CN192054; organism=Citrus sinensis; type=EST; length=312bp
GAGGAAATGGCTTCAGCTGACGTAAAAGCACAAGACCCTCGAATCGCTGG
TATTTCCTCAGCAATTCGTGTCATCCCAGACTTCCCTAAACCAGGGATTA
TGTTTCAAGATATCACAACATTGCTTCTTGATACCAAGGCTTTTAGAGAT
ACTATTGATCTGTTCGTTGAGAGGTACAAGGACAAAAACATCTCTGTTGT
TGCAGGTATTGAAGCTAGGGGTTTTATATTTGGGCCTCCTATTGCATTGG
CTATTGGGGCAAAGTTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGGG
GAGGTCATTTCC
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