CN192054

Overview
NameCN192054
Unique NameCN192054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_ACTP7 (Adenine phosphoribosyltransferase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=apt PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.880e-22
Identity = 51/87 (58.62%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            I S+I+ IPD+PK GI+F+DIT+LL   +AF+ T+D  V  +KDK I+ V G E+RGFIFG P+ALA+G  FV +RKPKKLP  VIS
Sbjct:    7 IKSSIKSIPDYPKAGIIFRDITSLLEVPEAFKATVDAIVAEFKDKGITKVVGTESRGFIFGAPVALALGVPFVLVRKPKKLPRAVIS 93          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_ACTP2 (Adenine phosphoribosyltransferase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=apt PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.880e-22
Identity = 51/87 (58.62%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            I S+I+ IPD+PK GI+F+DIT+LL   +AF+ T+D  V  +KDK I+ V G E+RGFIFG P+ALA+G  FV +RKPKKLP  VIS
Sbjct:    7 IKSSIKSIPDYPKAGIIFRDITSLLEVPEAFKATVDAIVAEFKDKGITKVVGTESRGFIFGAPVALALGVPFVLVRKPKKLPRAVIS 93          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_SHEPA (Adenine phosphoribosyltransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=apt PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.456e-22
Identity = 49/90 (54.44%), Postives = 68/90 (75.56%), Query Frame = 1
Query:   43 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            +A I ++I+ IP++PK GI+F+D+T+LL D +A++ TI L VE YKD+  + V G EARGF+FG P+AL +G  FVP+RKP KLP E IS
Sbjct:    8 LALIKNSIKTIPNYPKEGILFRDVTSLLEDPQAYKLTIGLLVEHYKDQGFTKVVGTEARGFLFGAPLALELGIGFVPVRKPGKLPRETIS 97          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_SHEHH (Adenine phosphoribosyltransferase OS=Shewanella halifaxensis (strain HAW-EB4) GN=apt PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.456e-22
Identity = 49/90 (54.44%), Postives = 68/90 (75.56%), Query Frame = 1
Query:   43 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            +A I ++I+ IP++PK GI+F+D+T+LL D +A++ TI L VE YKD+  + V G EARGF+FG P+AL +G  FVP+RKP KLP E IS
Sbjct:    8 LALIKNSIKTIPNYPKEGILFRDVTSLLEDPQAYKLTIGLLVEHYKDQGFTKVVGTEARGFLFGAPLALELGIGFVPVRKPGKLPRETIS 97          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_SHEAM (Adenine phosphoribosyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=apt PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.456e-22
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 1
Query:   43 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            +A I  +I+ IPD+PK GIMF+D+T+LL D  A++  + L VERYKD   + V G E+RGF+FG P+AL +G  FVP+RKP KLP E IS
Sbjct:    6 LALIKQSIKTIPDYPKAGIMFRDVTSLLEDHTAYQTAMKLLVERYKDSGFTKVVGTESRGFLFGAPLALELGVGFVPVRKPGKLPRETIS 95          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_LEPIN (Adenine phosphoribosyltransferase OS=Leptospira interrogans GN=apt PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.456e-22
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            + S IR IPD+PKPGI+F+DIT+LLLD +    TI  FV RY+ K I+ VAGIEARGF+ G P+A  +G  F+P+RK  KLP E +S
Sbjct:    4 VKSKIRTIPDYPKPGILFRDITSLLLDPEGLALTIGTFVNRYQGKGITKVAGIEARGFLTGAPLAFQLGVGFIPIRKKGKLPSETVS 90          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_LEPIC (Adenine phosphoribosyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=apt PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.456e-22
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            + S IR IPD+PKPGI+F+DIT+LLLD +    TI  FV RY+ K I+ VAGIEARGF+ G P+A  +G  F+P+RK  KLP E +S
Sbjct:    4 VKSKIRTIPDYPKPGILFRDITSLLLDPEGLALTIGTFVNRYQGKGITKVAGIEARGFLTGAPLAFQLGVGFIPIRKKGKLPSETVS 90          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_CLOB8 (Adenine phosphoribosyltransferase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=apt PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.207e-22
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            +   IRVI +FPK GI F+DITTL+ D +A R+TI+  V+  +DK I ++ G EARGFIFG P+A A+G  F+P+RKP KLPGE IS
Sbjct:    3 LQEKIRVIENFPKEGISFKDITTLIADGEALRETINRIVKHLEDKKIDLIVGPEARGFIFGVPVAYALGVGFIPVRKPGKLPGETIS 89          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_PHOPR (Adenine phosphoribosyltransferase OS=Photobacterium profundum GN=apt PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.189e-22
Identity = 47/87 (54.02%), Postives = 67/87 (77.01%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            I ++I+ I D+PKPGI+F+D+T+L+ D +A+R T+ + +ERY +  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP EVIS
Sbjct:    2 IRNSIKSISDYPKPGILFRDVTSLMEDPEAYRATMQVLIERYSNTGITKVIGTEARGFLFGAPLALELGVGFVPVRKPGKLPREVIS 88          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_ACAM1 (Adenine phosphoribosyltransferase OS=Acaryochloris marina (strain MBIC 11017) GN=apt PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.189e-22
Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEV 306
            + S IR IPDFPKPGI+F+DITTLL +    R  ID F E Y++++I  V GIE+RGFIFG P+A  +GA FVP+RKP KLP  +
Sbjct:    3 LKSLIRDIPDFPKPGILFRDITTLLQNPDGLRYVIDQFTEDYREQSIDYVVGIESRGFIFGAPLAYQLGAGFVPVRKPGKLPAAI 87          
The following BLAST results are available for this feature:
BLAST of CN192054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_ACTP71.880e-2258.62Adenine phosphoribosyltransferase OS=Actinobacillu... [more]
APT_ACTP21.880e-2258.62Adenine phosphoribosyltransferase OS=Actinobacillu... [more]
APT_SHEPA2.456e-2254.44Adenine phosphoribosyltransferase OS=Shewanella pe... [more]
APT_SHEHH2.456e-2254.44Adenine phosphoribosyltransferase OS=Shewanella ha... [more]
APT_SHEAM2.456e-2254.44Adenine phosphoribosyltransferase OS=Shewanella am... [more]
APT_LEPIN2.456e-2256.32Adenine phosphoribosyltransferase OS=Leptospira in... [more]
APT_LEPIC2.456e-2256.32Adenine phosphoribosyltransferase OS=Leptospira in... [more]
APT_CLOB83.207e-2256.32Adenine phosphoribosyltransferase OS=Clostridium b... [more]
APT_PHOPR4.189e-2254.02Adenine phosphoribosyltransferase OS=Photobacteriu... [more]
APT_ACAM14.189e-2257.65Adenine phosphoribosyltransferase OS=Acaryochloris... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006E10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192054 ID=CN192054; Name=CN192054; organism=Citrus sinensis; type=EST; length=312bp
GAGGAAATGGCTTCAGCTGACGTAAAAGCACAAGACCCTCGAATCGCTGG
TATTTCCTCAGCAATTCGTGTCATCCCAGACTTCCCTAAACCAGGGATTA
TGTTTCAAGATATCACAACATTGCTTCTTGATACCAAGGCTTTTAGAGAT
ACTATTGATCTGTTCGTTGAGAGGTACAAGGACAAAAACATCTCTGTTGT
TGCAGGTATTGAAGCTAGGGGTTTTATATTTGGGCCTCCTATTGCATTGG
CTATTGGGGCAAAGTTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGGG
GAGGTCATTTCC
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