CN192054

Overview
NameCN192054
Unique NameCN192054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_YERPY (Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=apt PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.471e-22
Identity = 51/101 (50.50%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   10 ASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            ASA   AQ  ++  I  +I+ IPD+PK GI+F+D+T+LL + KA+  +I+L  E Y +  ++ V G EARGF+FG P+ALA+G  FVP+RKP KLP E IS
Sbjct:    3 ASASKTAQ--QLKYIKDSIKTIPDYPKAGILFRDVTSLLENPKAYSASIELLSEHYSESGVTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETIS 101          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_YERPB (Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=apt PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.471e-22
Identity = 51/101 (50.50%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   10 ASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            ASA   AQ  ++  I  +I+ IPD+PK GI+F+D+T+LL + KA+  +I+L  E Y +  ++ V G EARGF+FG P+ALA+G  FVP+RKP KLP E IS
Sbjct:    3 ASASKTAQ--QLKYIKDSIKTIPDYPKAGILFRDVTSLLENPKAYSASIELLSEHYSESGVTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETIS 101          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_YERP3 (Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=apt PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.471e-22
Identity = 51/101 (50.50%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   10 ASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            ASA   AQ  ++  I  +I+ IPD+PK GI+F+D+T+LL + KA+  +I+L  E Y +  ++ V G EARGF+FG P+ALA+G  FVP+RKP KLP E IS
Sbjct:    3 ASASKTAQ--QLKYIKDSIKTIPDYPKAGILFRDVTSLLENPKAYSASIELLSEHYSESGVTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETIS 101          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_PSEA6 (Adenine phosphoribosyltransferase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=apt PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.471e-22
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 1
Query:   46 AGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            A I S I+ +PD+PKPGI+F+D+T++L D KA+  +I+L V+ +   N   VAG EARGF+FG P+A+ +G  F+P+RKP KLP +VIS
Sbjct:    4 AYIKSVIKTVPDYPKPGILFRDVTSILEDHKAYTTSIELLVKEFAPYNFDKVAGTEARGFLFGAPLAIELGIGFIPVRKPNKLPRKVIS 92          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_CLONN (Adenine phosphoribosyltransferase OS=Clostridium novyi (strain NT) GN=apt PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.471e-22
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            +   IRVI  FPK GI F+DITT+L D +A + T+D  VE  KDKN+ VV G EARGF+FG P+A A+GA FVP+RK  KLP E IS
Sbjct:    3 LKEKIRVIEGFPKEGISFKDITTVLNDKEALKYTVDAIVEHLKDKNVDVVVGPEARGFLFGTPVAYALGAAFVPVRKKGKLPCETIS 89          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_YERE8 (Adenine phosphoribosyltransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=apt PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.145e-22
Identity = 47/87 (54.02%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            I  +I+ IPD+PK GI+F+D+T+LL D  A+  +I+L  ERY DK ++ V G EARGF+FG P+AL++G  FVP+RKP KLP   IS
Sbjct:   15 IKDSIKTIPDYPKAGILFRDVTSLLEDPLAYAASIELLTERYLDKGVTKVVGTEARGFLFGAPVALSLGVGFVPVRKPGKLPRATIS 101          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_ERWCT (Adenine phosphoribosyltransferase OS=Erwinia carotovora subsp. atroseptica GN=apt PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.145e-22
Identity = 46/87 (52.87%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            I ++I+ IPD+PKPGI+F+D+T+LL D  A+  +ID+   RY++  ++ V G EARGF+FG P+ALA+G  FVP+RKP KLP   IS
Sbjct:   13 IKNSIKSIPDYPKPGILFRDVTSLLEDPVAYAASIDMLANRYRNTGVTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRPTIS 99          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_CLOTE (Adenine phosphoribosyltransferase OS=Clostridium tetani GN=apt PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.145e-22
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            +   IRVI  FPK GI F+D+TT+L + +AF+ TID  VE  KDKN+ VV G EARGF+FG P+A A+GA FVP+RK  KLP   IS
Sbjct:    3 LKDKIRVIQGFPKEGISFKDVTTILQEKEAFKYTIDTLVEELKDKNVDVVVGPEARGFLFGAPLAYALGAGFVPVRKKGKLPSTTIS 89          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_SHEDO (Adenine phosphoribosyltransferase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=apt PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.332e-22
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   43 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            +A I  +I+ I D+PKPGIMF+D+T+LL D  A++ TI LFVE+Y+    + V G EARGF+FG P+AL +G  FVP+RKP KLP + I+
Sbjct:   10 LALIKQSIKTIADYPKPGIMFRDVTSLLEDASAYQATIALFVEKYQGMGFTKVVGTEARGFLFGAPLALELGIGFVPVRKPGKLPRKTIA 99          
BLAST of CN192054 vs. ExPASy Swiss-Prot
Match: APT_SALG2 (Adenine phosphoribosyltransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=apt PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.332e-22
Identity = 47/87 (54.02%), Postives = 67/87 (77.01%), Query Frame = 1
Query:   52 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 312
            + ++I+ I D+PK GI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKLGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97          
The following BLAST results are available for this feature:
BLAST of CN192054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_YERPY5.471e-2250.50Adenine phosphoribosyltransferase OS=Yersinia pseu... [more]
APT_YERPB5.471e-2250.50Adenine phosphoribosyltransferase OS=Yersinia pseu... [more]
APT_YERP35.471e-2250.50Adenine phosphoribosyltransferase OS=Yersinia pseu... [more]
APT_PSEA65.471e-2251.69Adenine phosphoribosyltransferase OS=Pseudoalterom... [more]
APT_CLONN5.471e-2258.62Adenine phosphoribosyltransferase OS=Clostridium n... [more]
APT_YERE87.145e-2254.02Adenine phosphoribosyltransferase OS=Yersinia ente... [more]
APT_ERWCT7.145e-2252.87Adenine phosphoribosyltransferase OS=Erwinia carot... [more]
APT_CLOTE7.145e-2257.47Adenine phosphoribosyltransferase OS=Clostridium t... [more]
APT_SHEDO9.332e-2253.33Adenine phosphoribosyltransferase OS=Shewanella de... [more]
APT_SALG29.332e-2254.02Adenine phosphoribosyltransferase OS=Salmonella ga... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006E10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192054 ID=CN192054; Name=CN192054; organism=Citrus sinensis; type=EST; length=312bp
GAGGAAATGGCTTCAGCTGACGTAAAAGCACAAGACCCTCGAATCGCTGG
TATTTCCTCAGCAATTCGTGTCATCCCAGACTTCCCTAAACCAGGGATTA
TGTTTCAAGATATCACAACATTGCTTCTTGATACCAAGGCTTTTAGAGAT
ACTATTGATCTGTTCGTTGAGAGGTACAAGGACAAAAACATCTCTGTTGT
TGCAGGTATTGAAGCTAGGGGTTTTATATTTGGGCCTCCTATTGCATTGG
CTATTGGGGCAAAGTTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGGG
GAGGTCATTTCC
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