CN192049

Overview
NameCN192049
Unique NameCN192049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.049e-37
Identity = 72/121 (59.50%), Postives = 99/121 (81.82%), Query Frame = -1
Query:  209 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQELRKEAENM 571
            P+VK+ G+EP ES +L+GGKPGPH I G G GF P +LD++++++V+++SS+++++MA+ LALKEGL+VGISSGA   AA+++A  PEN GKLIV V  SFGERYLSS LF  +RKEAE+M
Sbjct:  201 PDVKLIGLEPVESAVLSGGKPGPHKIQGLGAGFIPGVLDVNIIDEVVQISSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIVAVFPSFGERYLSSVLFDSVRKEAESM 321          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.049e-37
Identity = 75/121 (61.98%), Postives = 96/121 (79.34%), Query Frame = -1
Query:  209 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQELRKEAENM 571
            PNVK+YGVEP ES IL+GGKPGPH I G G GF P++L+ +++++V++VSSD+++ MAR LA +EGL+VGISSGA   AA++LA  PEN GKL V V  SFGERYLS+ LF   RKEAE+M
Sbjct:  200 PNVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPNVLETNLIDEVVQVSSDESIDMARLLAREEGLLVGISSGAAAAAAIKLAKRPENAGKLFVAVFPSFGERYLSTVLFDATRKEAESM 320          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSKM_ARATH (Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.032e-36
Identity = 73/123 (59.35%), Postives = 94/123 (76.42%), Query Frame = -1
Query:  203 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQELRKEAENMQP 571
            P  ++ GVEP ES+IL+GGKPGPH I G G GF P  LD  +M++V+ +SS++A++ A++LALKEGLMVGISSGA   AA+++A  PEN GKLI  V  SFGERYLS+ LFQ +R+E E MQP
Sbjct:  306 PKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVVFPSFGERYLSTPLFQSIREEVEKMQP 428          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSKP_ARATH (Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=OASB PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 7.395e-35
Identity = 69/123 (56.10%), Postives = 94/123 (76.42%), Query Frame = -1
Query:  203 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQELRKEAENMQP 571
            P +K+ GVEP ES IL+GGKPGPH I G G GF P  LD+ ++++ + +SS++A++ +++LAL+EGL+VGISSGA   AA+++A  PEN GKLI  V  SFGERYLS+ LFQ +R+E E MQP
Sbjct:  268 PELKVIGVEPTESAILSGGKPGPHKIQGIGAGFVPKNLDLAIVDEYIAISSEEAIETSKQLALQEGLLVGISSGAAAAAAIQVAKRPENAGKLIAVVFPSFGERYLSTQLFQSIREECEQMQP 390          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSKP_CAPAN (Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.793e-34
Identity = 73/123 (59.35%), Postives = 93/123 (75.61%), Query Frame = -1
Query:  203 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQELRKEAENMQP 571
            PN+KI GVEP ESN+L+GGKPG          F P  LD DVM++V+E+SSD+AV+ A++LAL+EGL+VGISSGA  +AA+++A  PEN GKLI  V  SFGERYLSS LFQ +R+E E M+P
Sbjct:  260 PNIKIIGVEPTESNVLSGGKPG----------FIPGNLDQDVMDEVIEISSDEAVETAKQLALQEGLLVGISSGAAALAAIQVAKRPENAGKLIAVVFPSFGERYLSSILFQSIREECEKMKP 372          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSK_MYCTU (Cysteine synthase A OS=Mycobacterium tuberculosis GN=cysK PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.555e-29
Identity = 62/114 (54.39%), Postives = 85/114 (74.56%), Query Frame = -1
Query:  230 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQEL 571
            P+ +   VEPA S +L+GG+ GPH I G G GF P +LD D++++++ V ++DA+ +AR LA +EGL+VGISSGA TVAAL++A  PEN GKLIV V   FGERYLS+ LF ++
Sbjct:  195 PSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLSTPLFADV 308          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSK_MYCBO (Cysteine synthase A OS=Mycobacterium bovis GN=cysK PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.555e-29
Identity = 62/114 (54.39%), Postives = 85/114 (74.56%), Query Frame = -1
Query:  230 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQEL 571
            P+ +   VEPA S +L+GG+ GPH I G G GF P +LD D++++++ V ++DA+ +AR LA +EGL+VGISSGA TVAAL++A  PEN GKLIV V   FGERYLS+ LF ++
Sbjct:  195 PSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLSTPLFADV 308          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSK_SYNY3 (Cysteine synthase OS=Synechocystis sp. (strain PCC 6803) GN=cysK PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 4.345e-27
Identity = 56/114 (49.12%), Postives = 83/114 (72.81%), Query Frame = -1
Query:  230 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQEL 571
            P+ +   VEP  S +L+GGKPGPH I G G GF P++LD++++++V+ V+ ++A+   R LA +EG++ GIS+GA   AA+++A  P NK KLIV +  SFGERYLS+ LFQ+L
Sbjct:  198 PSFQAIAVEPQNSPVLSGGKPGPHKIQGIGAGFIPEVLDVNLIDEVIAVTDEEAIAYGRRLAREEGILSGISTGAALAAAIKVAKRPANKDKLIVMIQPSFGERYLSTPLFQDL 311          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSK_MYCLE (Cysteine synthase A OS=Mycobacterium leprae GN=cysK PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.679e-26
Identity = 58/114 (50.88%), Postives = 81/114 (71.05%), Query Frame = -1
Query:  230 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQEL 571
            P  +   VEPA S +L+GG+ GPH I G G GF P +L +D++++++ V +++A+ +AR LA +EGL+VGIS+GA   AAL +A  PEN GKLIV V   FGERYLS+ LF +L
Sbjct:  195 PATQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPSVLVLDLVDEIVTVGNEEALDLARRLAKEEGLLVGISAGAAVCAALHVARRPENTGKLIVVVLPDFGERYLSTMLFADL 308          
BLAST of CN192049 vs. ExPASy Swiss-Prot
Match: CYSK_NEIMB (Cysteine synthase OS=Neisseria meningitidis serogroup B GN=cysK PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.275e-26
Identity = 58/114 (50.88%), Postives = 81/114 (71.05%), Query Frame = -1
Query:  230 PNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPDILDMDVMEKVLEVSSDDAVKMARELALKEGLMVGISSGANTVAALRLASMPENKGKLIVTVHASFGERYLSSALFQEL 571
            P VK+  VEP  S +L+GG+ GPH I G G GF P +L+  + + + +VS++ A + AR +A KEG++VGISSGA   +AL+LA  PEN+GKLIV +  S+GERYLS+ LF +L
Sbjct:  196 PEVKVVAVEPEASPVLSGGEKGPHPIQGIGAGFIPTVLNTKIYDSITKVSNEAAFETARAIAEKEGILVGISSGAAVWSALQLAKQPENEGKLIVVLLPSYGERYLSTPLFADL 309          
The following BLAST results are available for this feature:
BLAST of CN192049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CYSK_SPIOL6.049e-3759.50Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSK2_BRAJU6.049e-3761.98Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSKM_ARATH1.032e-3659.35Cysteine synthase, mitochondrial OS=Arabidopsis th... [more]
CYSKP_ARATH7.395e-3556.10Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_CAPAN4.793e-3459.35Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK_MYCTU3.555e-2954.39Cysteine synthase A OS=Mycobacterium tuberculosis ... [more]
CYSK_MYCBO3.555e-2954.39Cysteine synthase A OS=Mycobacterium bovis GN=cysK... [more]
CYSK_SYNY34.345e-2749.12Cysteine synthase OS=Synechocystis sp. (strain PCC... [more]
CYSK_MYCLE3.679e-2650.88Cysteine synthase A OS=Mycobacterium leprae GN=cys... [more]
CYSK_NEIMB6.275e-2650.88Cysteine synthase OS=Neisseria meningitidis serogr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006E06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192049 ID=CN192049; Name=CN192049; organism=Citrus sinensis; type=EST; length=571bp
TTTTTTTTTTTTTTTTTAACTGCAAAATATCATTTTCATTTTCATTTTTA
TTCTTAGAAAATACAAATTGAAACAATACCAAACGGGCCTAAACTATCTG
AAGGGATCAAATTTCATACAAATAGAGTTCAACAAGCAAATTTGATACAA
GTTCAGCTTTCTGATAAGCAAGCCCCATATACAAGCATTAGTCAACTGAA
ACTGGTTGCATGTTCTCAGCTTCTTTCCTGAGTTCTTGAAACAGAGCAGA
TGACAAGTATCGCTCCCCAAAGCTCGCATGAACAGTCACAATAAGTTTGC
CTTTGTTCTCTGGCATGCTAGCAAGTCTTAGGGCTGCCACTGTATTGGCA
CCAGATGATATTCCAACCATAAGCCCTTCCTTCAATGCCAGTTCCCTGGC
CATTTTTACTGCATCGTCACTACTAACCTCGAGAACCTTTTCCATCACAT
CCATGTCTAGTATATCTGGTTTGAATCCAACGCCATTGCCAGTAATGAGA
TGAGGACCTGGTTTGCCCCCATTCAATATATTACTTTCAGCTGGTTCCAC
TCCATAGATCTTAACATTAGG
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