CX301810

Overview
NameCX301810
Unique NameCX301810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_THESM (Phenylalanyl-tRNA synthetase beta chain OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=pheT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 60/227 (26.43%), Postives = 99/227 (43.61%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGSAVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAVDQNRYYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNIEPFL*GS 696
            D++EDV IAYGYNN+E   P+    G         + +R  +   G  EV++F L + +  F+ +  P+    V I NP + ++   R  LL  L++ LS + +   P ++FEV    L  +  E   I+E +L     +    F     +LD ++  L  +        R     +F PG                  HP V++N+ +  P +A E+ + PF  GS
Sbjct:  338 DVLEDVLIAYGYNNIEPEEPELAVQGKGDDFVDFENAIRDLMVGFGLQEVMTFNLTNREAQFDKMNIPEE-DIVEIENPISQKWSALRRWLLPSLMEFLSQNTHEEYPQRIFEVGKATLIDESRETKTISESKLVVAIAHPKVTFTEAKEILDSVLRHLGAEYT-----IREIEYGSFIPGRAGEIIVEGKKVGIIGEIHPQVLENWGVEMPVAAFEIFLRPFYKGS 558          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_METST (Phenylalanyl-tRNA synthetase beta chain OS=Methanosphaera stadtmanae (strain DSM 3091) GN=pheT PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 56/225 (24.89%), Postives = 98/225 (43.56%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGSAVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAVDQNRYYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXAF-------HPAVIQNFELNYPCSAVEL 669
            DI+E++A+ YG+N L    P   T            +L   +    +TE+ S  L S  +++  L++      V +A P T +  + R +L+  LL+ L  +K+  LP K+FE+ DV    +++E   +  ++LAA   +  + F  I  +++  +  +      + ++     D  F  G  A              F       HP V+ NFEL YP  A E+
Sbjct:  334 DIIENIALGYGFNELPAQLPDFATVANPDSKRQFDQILEQVMIGLSFTEIKSLMLTSETQHYTKLRKEVEEDRVTVAQPITQDRTMIRKSLINSLLEFLEDNKHEELPQKIFEIGDVAYINENAETKMVTVKKLAAAQISSVANFTTIKSIVESFVANMG-----FEMELEDHDDSAFIKGRCAKFTTKPLNKNTPFTFKGYFGEIHPEVLTNFELEYPVIAFEV 553          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_THEPD (Phenylalanyl-tRNA synthetase beta chain OS=Thermofilum pendens (strain Hrk 5) GN=pheT PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 62/225 (27.56%), Postives = 99/225 (44.00%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGSAVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIY----TNVTSGFEHIHGLLDQIMLKLAVDQNRYYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNIE 678
            DI E+VA+ YGY  +E      L  G + P+ + +  LR  +   G+ EV ++ + S    F+ +  P     V + NP+   +   RT ++  LL+ +S SK+   P +VFE  DV +  +  +     ERRLA         +T G   + GL  Q+ +   +++  +         P+F  G  A               HP V+ NF L  P  A ELN+E
Sbjct:  329 DIAEEVAMGYGYERIEPAVIPPLHPGREDPIEVFTRALREGMVGLGFVEVNNYMMTSASLMFDAMLLPRQ-PIVEVENPRHEAYHALRTWIVPQLLRLMSSSKHAGYPQRVFEAGDVAIPDESRDNRVREERRLAFAVAGKGVTLTDGLAALKGLFRQLGVSFKLEKAEH---------PSFIAGRVARVVTEAGDAGIVGEVHPQVLVNFGLEVPVVAGELNVE 543          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_METM6 (Phenylalanyl-tRNA synthetase beta chain OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pheT PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 59/225 (26.22%), Postives = 97/225 (43.11%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQ-RPDNGSAVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVL---NKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAVDQNRYYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNIE 678
            D+ E++AI YGY   E   P   T G +  +      +   +   G+ EV++  L +    FE +    +    + +  P + E  V RT++L  LL+TL  +K+  LP K+FE+ D V+   N  +++    N +++A   T+  + F  I      ++ +   D      +      P F PG  A               HP VI NFEL +P    E+ IE
Sbjct:  335 DLKEEIAINYGYEKFEGKLPSVATTGSKDSVEKKCSAMSDLMIGLGFYEVMNLTLSNQDTLFEKMNLEVEEKDYIEVLKPASIEHRVLRTSILPLLLETLYINKHHSLPQKIFEIGDCVIIDENDTETDTKCKNIKKIAGAITHPLTNFNEIKSSTGALLREFFED-----FEFENYEHPAFIPGRCAKIIKDRKEVGFFGEIHPEVILNFELEHPIVGFEITIE 554          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_KORCO (Phenylalanyl-tRNA synthetase beta chain OS=Korarchaeum cryptofilum (strain OPF8) GN=pheT PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 63/222 (28.38%), Postives = 103/222 (46.40%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKT-LTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGSAVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAVDQNRYYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNIE 678
            D+ E+V+I  G N +    PK  +T G   P+  +S  +R  +   GY EVL++ + S    F  + R +    V I+NP +  + V R  L  GLL  L+ + ++  P KVFE+ DVVL  +  E    +ERR+AA Y + + GFE I+       LK+  +   Y ++     +  F  G  A+               P V+ N  +  P +  E+ ++
Sbjct:  333 DVAEEVSITLGLNKIGYELPKNVMTVGRPHPVEKVSRKVRTVMIGLGYQEVLNYIMTSRASLFHAVGREER-EVVEISNPVSESYSVLRDALFPGLLAFLANNTHVRYPQKVFEIGDVVLIDERLENKTRDERRVAAAYADDSVGFEDIYS-----HLKVLFENLSYRIELEPRKERPFIEGRCASVLREGEEVGVIGEIDPEVLLNLGITVPVAIFEVALK 548          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_SULSO (Phenylalanyl-tRNA synthetase beta chain OS=Sulfolobus solfataricus GN=pheT PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 59/220 (26.82%), Postives = 101/220 (45.91%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGSAVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAVDQNRYYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNI 675
            DI+ED+A++ GYNNLE +   +  YG    L +L   +R     +G+ EV +F L  +++  +          V I NP + E+   R +L+  LL  LS +++   PI++FE  DVV+    ++ G  N++R A    +    +E +   +  I+  L ++ N  Y +     +  F  G  A+              +P V+  F + YP    EL I
Sbjct:  327 DIVEDIAMSIGYNNLEPSKYISTNYGSYDYLTLLERKMRELSIGAGFVEVFNFVLIKNEKILD-------SKYVKILNPISEEYNAVRNSLIPILLDFLSKNQHAKFPIRIFETGDVVIYDSSTDTGFRNDKRAAYAIMDNKVSYEDVQAPIHYILKTLGIEVN--YKEE---NNDIFIEGRSASIVYENEKIGVIGEINPDVLIRFGIEYPTVIAELYI 534          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_UNCMA (Phenylalanyl-tRNA synthetase beta chain OS=Uncultured methanogenic archaeon RC-I GN=pheT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 57/221 (25.79%), Postives = 95/221 (42.99%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGSAVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLA-VDQNRYYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNI 675
            D+++DV  A+GYNN+  + P T + G       L D +R  +   G  +  +F L    E F  +  PD+G+AV I+NP   ++ + RT+L+  L+  LS + +   P  +FEV  V         G      +A       +GF  I   L  +      +D+    L +     P+F PG  A                P V++++ +  P +A E+ I
Sbjct:  333 DVVDDVGRAFGYNNITPSYPNTPSVGKLTEATKLGDAIRNTMIGLGCQDTFNFILIGKDEVFGKMNLPDDGTAVEISNPYAEQYNIVRTSLIPSLMIVLSNNLHRDYPQNIFEVGTVAHLDSAENTGVKEIDHVACTLCYAKAGFNEIKVKLQSLCANFGKLDE----LKTVAAEHPSFIPGRCAEVRIGDKKVGIIGELSPVVLKSWGIEMPVAAFEMEI 549          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_PYRKO (Phenylalanyl-tRNA synthetase beta chain OS=Pyrococcus kodakaraensis GN=pheT PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 62/236 (26.27%), Postives = 98/236 (41.53%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRP--------------DNGSAVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAVDQNRYYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNIEP 681
            D++EDV IAYGYN +E   PK    G         D +R  +   G  EV++F L + +  ++ +  P                   V I NP + ++   R  L+  LL  LS + +   P K+FEV    L  +  E   ++E +LA    +    F     +L+ +M  L  +   Y L+      P+F PG                  HPAV++N+ +  P +A EL + P
Sbjct:  337 DVLEDVLIAYGYNEIEPEEPKLAVQGRGDKFIEFEDAVRELMVGFGLQEVMTFNLTNREAQYDRMNLPCGEHQEECRDYFNHPPAELVEIENPISPKWSALRNWLIPSLLDFLSQNTHEEYPQKLFEVGKATLIDESRETKTVSESKLAVALAHPRVTFTEAKEILEGVMRHLGFE---YELEE--AEHPSFIPGRVGKIIVNGETIGVIGEIHPAVLENWGIEMPVAAFELFLAP 567          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_THEGJ (Phenylalanyl-tRNA synthetase beta chain OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pheT PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 61/231 (26.41%), Postives = 96/231 (41.56%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENF---------EYLQRPDNGSAVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAVDQNRYYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNIEP 681
            D++EDV IAYGYN +E   PK    G         D +R  +   G  EV++F L + +  +         +Y   P     V I NP + ++   R  LL  LL  LS + +   P ++FEV    L  +  E   ++E +LA +       F     +LD +M  L  +   Y L+      P+F PG                  HP+V++ + +  P +  EL + P
Sbjct:  337 DVLEDVLIAYGYNEIEPEEPKLAVQGRGDKFIEFEDAVRELMVGFGLQEVMTFNLTNREAQYGKMNLEYGRDYFNNPP-AELVEIENPISPKWSALRNWLLPSLLDFLSQNTHEEYPQRLFEVGKATLIDESRETKTVSESKLAVVLAQPRVTFTDTKEILDSVMRHLGFE---YELEE--VEHPSFIPGRVGKVIVKGKAIGVIGEIHPSVLEKWGIEMPVAGFELFLRP 561          
BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_BORBZ (Phenylalanyl-tRNA synthetase beta chain OS=Borrelia burgdorferi (strain ZS7) GN=pheT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 58/230 (25.22%), Postives = 99/230 (43.04%), Query Frame = 1
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGSAVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAVDQN------RYYLDSRGCTDPTFFPGMRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNIEPFL 687
            D++EDV I  G ++     PK    G   PL   S  +R  +   G+ E++   + S K+  + +   D  + + ++NP T  +E  R +++  LLK+ S S N P P K+FE+  V L   D+  G      LA + +     F  I+ ++  +   L ++ N       +Y++ RG           A+               P V+ NF +  PCS  E+NI   +
Sbjct:  346 DVIEDVMIGEGLSSFNPELPKAFAVGRLSPLEEFSRNVRNLMVGMGFQEMIYNYMGSKKDFIDRMNINDQ-NFLKVSNPMTENYEYIRASIIPNLLKSESVSSNFPYPHKIFEIGKVALRNLDTTEGTSTFTNLAFLMSGKEISFNEINSIVATLFYYLNIEINLIESKTTFYINGRG-----------ADIVIEGFNIGGFGEISPYVLNNFGIFIPCSVFEVNINKLM 563          
The following BLAST results are available for this feature:
BLAST of CX301810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SYFB_THESM4.585e-1726.43Phenylalanyl-tRNA synthetase beta chain OS=Thermoc... [more]
SYFB_METST1.742e-1624.89Phenylalanyl-tRNA synthetase beta chain OS=Methano... [more]
SYFB_THEPD2.972e-1627.56Phenylalanyl-tRNA synthetase beta chain OS=Thermof... [more]
SYFB_METM62.972e-1626.22Phenylalanyl-tRNA synthetase beta chain OS=Methano... [more]
SYFB_KORCO2.972e-1628.38Phenylalanyl-tRNA synthetase beta chain OS=Korarch... [more]
SYFB_SULSO5.070e-1626.82Phenylalanyl-tRNA synthetase beta chain OS=Sulfolo... [more]
SYFB_UNCMA8.648e-1625.79Phenylalanyl-tRNA synthetase beta chain OS=Uncultu... [more]
SYFB_PYRKO8.648e-1626.27Phenylalanyl-tRNA synthetase beta chain OS=Pyrococ... [more]
SYFB_THEGJ1.475e-1526.41Phenylalanyl-tRNA synthetase beta chain OS=Thermoc... [more]
SYFB_BORBZ2.516e-1525.22Phenylalanyl-tRNA synthetase beta chain OS=Borreli... [more]

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Properties
Property NameValue
Genbank descriptionC08013H01SK PhyRootSw1 Citrus sinensis cDNA clone C08013H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301810 ID=CX301810; Name=CX301810; organism=Citrus sinensis; type=EST; length=697bp
AATTCGGCTCGAGGTGATATCATGGAAGATGTGGCGATAGCATATGGATA
CAATAACCTTGAAATCACACCTCCTAAAACATTGACGTATGGTGGCCAAC
AACCGCTTAATATGTTGAGTGATTTATTACGATATGAATTAGCTTTCTCT
GGCTATACTGAAGTCTTGTCTTTTGCTTTGTGCTCACACAAGGAGAATTT
TGAATATTTACAACGACCCGATAATGGATCAGCAGTTGTGATTGCTAATC
CAAAAACCACTGAATTTGAAGTGGCAAGAACAACGTTGTTAGTGGGATTA
TTAAAAACATTGTCGTGTAGTAAGAACTTGCCATTGCCCATTAAAGTTTT
CGAGGTATCCGATGTGGTGTTAAATAAAAAAGATTCAGAAGTTGGTGCAA
TTAATGAACGTCGCCTCGCTGCTATCTACACTAATGTCACCTCCGGCTTT
GAGCACATTCACGGTCTTTTGGATCAAATTATGTTGAAATTAGCAGTGGA
TCAAAACAGATATTACTTGGATTCGCGTGGTTGCACTGACCCAACTTTCT
TCCCAGGAATGAGAGCGAATGTAATTGTCGACGAANAGGTAGTAGGAGTC
ATCGGAGCTTTTCACCCCGCTGTTATTCAAAATTTTGAGTTAAATTATCC
TTGTTCAGCAGTGGAATTGAACATCGAACCTTTTTTGTGAGGAAGTC
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