CN192013

Overview
NameCN192013
Unique NameCN192013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_YERPE (Asparaginyl-tRNA synthetase OS=Yersinia pestis GN=asnS PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.014e-52
Identity = 101/183 (55.19%), Postives = 131/183 (71.58%), Query Frame = 3 
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++   +L+   DDM+F A+  DK  ++RL+   ++ F ++ YT            G+ FEN V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMR+N+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+IS++
Sbjct:  266 AEKMLKYVFQAVLNERADDMKFFAERVDKDAVDRLQRFVTSDFAQVDYTDAIEILLA---SGQKFENDVSWGIDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARLAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLISYV 445
[Close]
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_YERPA (Asparaginyl-tRNA synthetase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=asnS PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.014e-52
Identity = 101/183 (55.19%), Postives = 131/183 (71.58%), Query Frame = 3 
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++   +L+   DDM+F A+  DK  ++RL+   ++ F ++ YT            G+ FEN V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMR+N+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+IS++
Sbjct:  266 AEKMLKYVFQAVLNERADDMKFFAERVDKDAVDRLQRFVTSDFAQVDYTDAIEILLA---SGQKFENDVSWGIDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARLAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLISYV 445
[Close]
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_YERP3 (Asparaginyl-tRNA synthetase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=asnS PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.014e-52
Identity = 101/183 (55.19%), Postives = 131/183 (71.58%), Query Frame = 3 
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++   +L+   DDM+F A+  DK  ++RL+   ++ F ++ YT            G+ FEN V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMR+N+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+IS++
Sbjct:  266 AEKMLKYVFQAVLNERADDMKFFAERVDKDAVDRLQRFVTSDFAQVDYTDAIEILLA---SGQKFENDVSWGIDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARLAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLISYV 445
[Close]
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_YERE8 (Asparaginyl-tRNA synthetase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=asnS PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.014e-52
Identity = 101/183 (55.19%), Postives = 131/183 (71.58%), Query Frame = 3 
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++   +L+   DDM+F A+  DK  ++RL+   ++ F ++ YT            G+ FEN V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMR+N+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+IS++
Sbjct:  266 AEKMLKYVFQAVLNERADDMKFFAERVDKDAVDRLQRFVTSDFAQVDYTDAIEILLA---SGQKFENDVSWGIDLSSEHERYLAEQHFKAPVVVKNYPKDIKAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARLAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLISYV 445
[Close]
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_ACTPJ (Asparaginyl-tRNA synthetase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=asnS PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.014e-52
Identity = 104/183 (56.83%), Postives = 130/183 (71.04%), Query Frame = 3 
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++   +L+   DDM+F AK+ DK  I RL    ++PF ++ YT          K GK FE  V WGIDL+SEHER+L E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLR++GTV HSGFGLGFER+I ++
Sbjct:  267 AEDMLKYVFKAVLEERKDDMQFFAKHIDKDVITRLENFIASPFAQVDYTDAIEILL---KSGKEFEFPVSWGIDLSSEHERFLAEEYFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDTRMVEMGLNPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYV 446
[Close]
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SERP5 (Asparaginyl-tRNA synthetase OS=Serratia proteamaculans (strain 568) GN=asnS PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.325e-52
Identity = 101/183 (55.19%), Postives = 130/183 (71.04%), Query Frame = 3 
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++   +L+   DDM+F A+  DK  I+RL+   ++ F ++ YT            G+ FEN V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMR+NDD KTVAAMDVL P +GE+IGG+QREER DV+  R+E MGL  E Y WY DLRR+GTV H+GFGLGFER+I+++
Sbjct:  266 AEKMLKYVFQAVLNERMDDMQFFAERVDKDAIDRLQRFVTSDFAQVDYTEAVEILIA---SGQTFENPVSWGIDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRMNDDGKTVAAMDVLAPGIGEIIGGAQREERLDVLDQRLEAMGLNKEDYWWYRDLRRYGTVPHAGFGLGFERLIAYV 445
[Close]
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_ACTP7 (Asparaginyl-tRNA synthetase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=asnS PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.325e-52
Identity = 104/183 (56.83%), Postives = 129/183 (70.49%), Query Frame = 3 
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++   +L+   DDM+F AK+ DK  I RL    + PF ++ YT          K GK FE  V WGIDL+SEHER+L E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLR++GTV HSGFGLGFER+I ++
Sbjct:  267 AEDMLKYVFKAVLEERKDDMQFFAKHIDKDVITRLENFIAAPFAQVDYTDAIEILL---KSGKEFEFPVSWGIDLSSEHERFLAEEYFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDTRMVEMGLNPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYV 446
[Close]
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_ACTP2 (Asparaginyl-tRNA synthetase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=asnS PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.325e-52
Identity = 104/183 (56.83%), Postives = 129/183 (70.49%), Query Frame = 3 
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++   +L+   DDM+F AK+ DK  I RL    + PF ++ YT          K GK FE  V WGIDL+SEHER+L E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLR++GTV HSGFGLGFER+I ++
Sbjct:  267 AEDMLKYVFKAVLEERKDDMQFFAKHIDKDVITRLENFIAAPFAQVDYTDAIEILL---KSGKEFEFPVSWGIDLSSEHERFLAEEYFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDTRMVEMGLNPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYV 446
[Close]
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SODGM (Asparaginyl-tRNA synthetase OS=Sodalis glossinidius (strain morsitans) GN=asnS PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.730e-52
Identity = 103/183 (56.28%), Postives = 127/183 (69.40%), Query Frame = 3 
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AEA +K++   +L    DDM+F A+  DK  INRL+   S  F ++ YT            G+ FEN V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMR+NDD KTVAAMDVL P +GE+IGGSQREER D +  R+ +MGL  + Y WY DLRR+GTV HSGFGLGFER+I ++
Sbjct:  266 AEAMLKYVFQAVLTERADDMQFFAERIDKEAINRLKQFISADFAQVDYTKAVEILQNC---GQTFENPVSWGIDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRMNDDGKTVAAMDVLAPGIGEIIGGSQREERLDRLDQRLAEMGLNKDDYWWYRDLRRYGTVPHSGFGLGFERLIVYV 445
[Close]
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SHEAM (Asparaginyl-tRNA synthetase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=asnS PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.730e-52
Identity = 103/183 (56.28%), Postives = 130/183 (71.04%), Query Frame = 3 
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE+ +K+  + +L    DDM+F A+  D S I+RL+   S+ F ++ YT            GK FE  VEWGIDL SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+E+M L  E Y WY DLRR+GTV H+GFGLGFER++S++
Sbjct:  266 AESMLKYCFNAVLQERMDDMKFFAERVDGSVIDRLQSFVSSDFAQVDYTDAVEILQNC---GKTFEYPVEWGIDLQSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARLEEMNLSKEDYWWYRDLRRYGTVPHAGFGLGFERLVSYV 445
The following BLAST results are available for this feature:
BLAST of CN192013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 301
Match NameE-valueIdentityDescription
SYN_YERPE1.014e-5255.19Asparaginyl-tRNA synthetase OS=Yersinia pestis GN=... [more]
SYN_YERPA1.014e-5255.19Asparaginyl-tRNA synthetase OS=Yersinia pestis bv.... [more]
SYN_YERP31.014e-5255.19Asparaginyl-tRNA synthetase OS=Yersinia pseudotube... [more]
SYN_YERE81.014e-5255.19Asparaginyl-tRNA synthetase OS=Yersinia enterocoli... [more]
SYN_ACTPJ1.014e-5256.83Asparaginyl-tRNA synthetase OS=Actinobacillus pleu... [more]
SYN_SERP51.325e-5255.19Asparaginyl-tRNA synthetase OS=Serratia proteamacu... [more]
SYN_ACTP71.325e-5256.83Asparaginyl-tRNA synthetase OS=Actinobacillus pleu... [more]
SYN_ACTP21.325e-5256.83Asparaginyl-tRNA synthetase OS=Actinobacillus pleu... [more]
SYN_SODGM1.730e-5256.28Asparaginyl-tRNA synthetase OS=Sodalis glossinidiu... [more]
SYN_SHEAM1.730e-5256.28Asparaginyl-tRNA synthetase OS=Shewanella amazonen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0006D10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192013 ID=CN192013; Name=CN192013; organism=Citrus sinensis; type=EST; length=571bp
ACTGTGCGGAGGCATACGTGAAATTTATGTGTGACTGGTTACTTGACCAT
TGCTTTGACGACATGGAGTTTATGGCTAAAAATTATGATAAAAGTTGCAT
TAACCGTCTAAGAATGGTTGCTTCAACTCCCTTTGAACGCATAACATACA
CTGAAGCAGTAGAGCTACTAGAGGTTGCTGTGAAGGAGGGGAAACATTTT
GAGAATAAAGTGGAGTGGGGGATTGATTTGGCATCTGAGCATGAAAGATA
CTTAACTGAGGTCAAATTTCAGAAGCCTGTCATTGTGTACAACTATCCAA
AAGGAATCAAAGCATTTTACATGAGGCTCAATGATGACTTGAAGACTGTG
GCAGCTATGGATGTCCTTGTACCTAAGGTAGGAGAGTTAATTGGTGGGAG
CCAAAGGGAAGAGCGTTATGATGTAATCAAGAGCAGAATAGAGGACATGG
GACTCCCTCTTGAACCATACGAGTGGTACCTTGACCTGCGGCGCTTTGGG
ACAGTGAAACATAGTGGGTTTGGCTTAGGCTTTGAACGGATGATTTCTTT
TTTGCCACAGGCATCGACAAC
back to top