CN192013

Overview
NameCN192013
Unique NameCN192013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_AERHH (Asparaginyl-tRNA synthetase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=asnS PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.730e-52
Identity = 104/183 (56.83%), Postives = 129/183 (70.49%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AEA +K++ + +L    DD+EF A++ DK  I RL    ++ F +I YT            GK FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER++ ++
Sbjct:  266 AEAMLKYVFNAVLAERRDDLEFFAQHVDKDAIGRLERFVASDFAQIDYTDAIEVLKNC---GKKFEFPVSWGIDLSSEHERYLAEEHFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARLAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLVVYV 445          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SHESR (Asparaginyl-tRNA synthetase OS=Shewanella sp. (strain MR-7) GN=asnS PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.260e-52
Identity = 103/187 (55.08%), Postives = 131/187 (70.05%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFLPQAS 566
            AE  +K+  D +L    DD++F A++ DK+ I RL+   S+ F ++ YT          K G+ FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+E+M L  E Y WY DLRR+GTV H+GFGLGFER++S++   S
Sbjct:  266 AEGMLKYAFDAVLAERMDDLQFFAQHVDKTVIERLQSFVSSDFAQVDYTDAVEILQ---KCGREFEFPVSWGIDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLEEMDLNKEDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVS 449          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SHEON (Asparaginyl-tRNA synthetase OS=Shewanella oneidensis GN=asnS PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.260e-52
Identity = 102/187 (54.55%), Postives = 131/187 (70.05%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFLPQAS 566
            AE  +K+  + +L    DD++F A++ DK+ I RL+   S+ F ++ YT          K G+ FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+E+M L  E Y WY DLRR+GTV H+GFGLGFER++S++   S
Sbjct:  266 AEGMLKYAFNAVLTERMDDLQFFAQHVDKTVIERLQSFVSSDFAQVDYTDAVEILQ---KSGREFEFPVSWGIDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLEEMDLNKEDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVS 449          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_ENT38 (Asparaginyl-tRNA synthetase OS=Enterobacter sp. (strain 638) GN=asnS PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.260e-52
Identity = 102/183 (55.74%), Postives = 129/183 (70.49%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AEA +K++   +L+   DDM+F A+  D   + RL    S  F ++ YT          K G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+E+MGL    Y WY DLRR+GTV HSGFGLGFER+I+++
Sbjct:  266 AEAMLKYVFKAVLEERADDMKFFAERVDSDAVARLERFVSADFAQVDYTDAVAILE---KCGEKFENPVYWGVDLSSEHERYLAEKHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMEEMGLNPADYSWYRDLRRYGTVPHSGFGLGFERLIAYV 445          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SHESA (Asparaginyl-tRNA synthetase OS=Shewanella sp. (strain ANA-3) GN=asnS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.854e-52
Identity = 103/187 (55.08%), Postives = 131/187 (70.05%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFLPQAS 566
            AE  +K+  + +L    DD++F A++ DK+ I RL+   S+ F ++ YT          K G+ FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+E+M L  E Y WY DLRR+GTV HSGFGLGFER++S++   S
Sbjct:  266 AEGMLKYAFNAVLAERMDDLQFFAQHVDKTVIERLQSFVSSDFAQVDYTDAVDILQ---KCGREFEFPVSWGIDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLEEMDLNKEDYWWYRDLRRYGTVPHSGFGLGFERLVSYVTGVS 449          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SHELP (Asparaginyl-tRNA synthetase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=asnS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.854e-52
Identity = 103/187 (55.08%), Postives = 130/187 (69.52%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFLPQAS 566
            AE  +K+    +L+   DD+EF A+  DK+ I RL    ++ F ++ YT            GK FE  VEWGIDL SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGG+QREER DV+ +R+++MGL  E Y WY DLRR+GTV HSGFGLGFER++S++   S
Sbjct:  266 AERMLKYCFRAVLNERRDDLEFFAQRVDKTVIERLESFVNSDFAQVDYTDAIEILKSC---GKKFEFDVEWGIDLQSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGAQREERLDVLDTRLDEMGLSKEDYWWYRDLRRYGTVPHSGFGLGFERLVSYVTGVS 449          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_MANSM (Asparaginyl-tRNA synthetase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=asnS PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.854e-52
Identity = 103/183 (56.28%), Postives = 129/183 (70.49%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++ + +L    DD++F  K+ DK  INRL    ++ F +I YT          K GK FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+ +R+ +MGL  E Y WY DLR++GTV HSGFGLGFER+I ++
Sbjct:  267 AEDMLKYVFNAVLKERMDDLKFFEKHIDKDVINRLERFVASDFAQIDYTDAIDVLL---KSGKKFEFPVSWGIDLSSEHERYLAEEHFKSPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAEMGLNPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYV 446          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_BACV8 (Asparaginyl-tRNA synthetase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=asnS PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.034e-52
Identity = 94/183 (51.37%), Postives = 129/183 (70.49%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE ++K+   W LD+C+DD++F+   +DK  I RL+ V    F R+ YT           +G  FE  V WG+DLASEHERYL E  F++PVI+ +YPK IKAFYM+ N+D KTV AMDVL PK+GE+IGGS+RE  YD + +RI+++G+P++   WYLD R+FG+  HSGFGLGFER++ F+
Sbjct:  264 AEDFIKYCVQWALDNCYDDVKFLNDMFDKGLIERLQGVLKEEFVRLPYTEGIKILEEAVVKGHKFEFPVYWGVDLASEHERYLVEEHFKRPVILTDYPKEIKAFYMKQNEDGKTVRAMDVLFPKIGEIIGGSEREADYDKLMTRIQELGIPMKDMWWYLDTRKFGSCPHSGFGLGFERLLLFV 446          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SHISS (Asparaginyl-tRNA synthetase OS=Shigella sonnei (strain Ss046) GN=asnS PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.574e-52
Identity = 101/183 (55.19%), Postives = 128/183 (69.95%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AEA +K++   +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I+++
Sbjct:  266 AEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYV 445          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SHIFL (Asparaginyl-tRNA synthetase OS=Shigella flexneri GN=asnS PE=3 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 6.574e-52
Identity = 101/183 (55.19%), Postives = 128/183 (69.95%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AEA +K++   +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I+++
Sbjct:  266 AEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYV 445          
The following BLAST results are available for this feature:
BLAST of CN192013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 301
Match NameE-valueIdentityDescription
SYN_AERHH1.730e-5256.83Asparaginyl-tRNA synthetase OS=Aeromonas hydrophil... [more]
SYN_SHESR2.260e-5255.08Asparaginyl-tRNA synthetase OS=Shewanella sp. (str... [more]
SYN_SHEON2.260e-5254.55Asparaginyl-tRNA synthetase OS=Shewanella oneidens... [more]
SYN_ENT382.260e-5255.74Asparaginyl-tRNA synthetase OS=Enterobacter sp. (s... [more]
SYN_SHESA3.854e-5255.08Asparaginyl-tRNA synthetase OS=Shewanella sp. (str... [more]
SYN_SHELP3.854e-5255.08Asparaginyl-tRNA synthetase OS=Shewanella loihica ... [more]
SYN_MANSM3.854e-5256.28Asparaginyl-tRNA synthetase OS=Mannheimia succinic... [more]
SYN_BACV85.034e-5251.37Asparaginyl-tRNA synthetase OS=Bacteroides vulgatu... [more]
SYN_SHISS6.574e-5255.19Asparaginyl-tRNA synthetase OS=Shigella sonnei (st... [more]
SYN_SHIFL6.574e-5255.19Asparaginyl-tRNA synthetase OS=Shigella flexneri G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006D10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192013 ID=CN192013; Name=CN192013; organism=Citrus sinensis; type=EST; length=571bp
ACTGTGCGGAGGCATACGTGAAATTTATGTGTGACTGGTTACTTGACCAT
TGCTTTGACGACATGGAGTTTATGGCTAAAAATTATGATAAAAGTTGCAT
TAACCGTCTAAGAATGGTTGCTTCAACTCCCTTTGAACGCATAACATACA
CTGAAGCAGTAGAGCTACTAGAGGTTGCTGTGAAGGAGGGGAAACATTTT
GAGAATAAAGTGGAGTGGGGGATTGATTTGGCATCTGAGCATGAAAGATA
CTTAACTGAGGTCAAATTTCAGAAGCCTGTCATTGTGTACAACTATCCAA
AAGGAATCAAAGCATTTTACATGAGGCTCAATGATGACTTGAAGACTGTG
GCAGCTATGGATGTCCTTGTACCTAAGGTAGGAGAGTTAATTGGTGGGAG
CCAAAGGGAAGAGCGTTATGATGTAATCAAGAGCAGAATAGAGGACATGG
GACTCCCTCTTGAACCATACGAGTGGTACCTTGACCTGCGGCGCTTTGGG
ACAGTGAAACATAGTGGGTTTGGCTTAGGCTTTGAACGGATGATTTCTTT
TTTGCCACAGGCATCGACAAC
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