CN192013

Overview
NameCN192013
Unique NameCN192013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_ECO24 (Asparaginyl-tRNA synthetase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=asnS PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.574e-52
Identity = 101/183 (55.19%), Postives = 128/183 (69.95%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AEA +K++   +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I+++
Sbjct:  266 AEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYV 445          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SHESW (Asparaginyl-tRNA synthetase OS=Shewanella sp. (strain W3-18-1) GN=asnS PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.586e-52
Identity = 103/187 (55.08%), Postives = 131/187 (70.05%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFLPQAS 566
            AEA +K+  + +L    DD++F A++ DK+ I RL+   S+ F ++ YT          K GK FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +M L  E Y WY DLRR+GTV H+GFGLGFER++S++   S
Sbjct:  266 AEAMLKYAFNAVLTERMDDLQFFAQHVDKTVIERLQSFVSSDFAQVDYTDAVDILQ---KCGKTFEFPVSWGIDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLAEMDLNKEDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVS 449          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SHESM (Asparaginyl-tRNA synthetase OS=Shewanella sp. (strain MR-4) GN=asnS PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.586e-52
Identity = 102/187 (54.55%), Postives = 131/187 (70.05%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFLPQAS 566
            AE  +K+  + +L    DD++F A++ DK+ I RL+   S+ F ++ YT          K G+ FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+E+M L  E Y WY DLRR+GTV H+GFGLGFER++S++   S
Sbjct:  266 AEGMLKYAFNAVLAERMDDLQFFAQHVDKTVIERLQSFVSSDFAQVDYTDAVEILQ---KCGREFEFPVSWGIDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLEEMDLNKEDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVS 449          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SHEPC (Asparaginyl-tRNA synthetase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=asnS PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.586e-52
Identity = 103/187 (55.08%), Postives = 131/187 (70.05%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFLPQAS 566
            AEA +K+  + +L    DD++F A++ DK+ I RL+   S+ F ++ YT          K GK FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +M L  E Y WY DLRR+GTV H+GFGLGFER++S++   S
Sbjct:  266 AEAMLKYAFNAVLTERMDDLQFFAQHVDKTVIERLQSFVSSDFAQVDYTDAVDILQ---KCGKTFEFPVSWGIDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLAEMDLNKEDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVS 449          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_ERWCT (Asparaginyl-tRNA synthetase OS=Erwinia carotovora subsp. atroseptica GN=asnS PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.586e-52
Identity = 100/183 (54.64%), Postives = 127/183 (69.40%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++   +L+   DDM F A+  DK  + RL    S+ F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMR+NDD KTVAAMDVL P +GE+IGGSQREER   + SR+E+MGL  E Y WY DLRR+GT+ HSGFGLGFER+I+++
Sbjct:  266 AENLLKYVFQAVLNERADDMAFFAERVDKEAVTRLEKFVSSDFAQVDYTDAVEILLNC---GQQFENPVYWGVDLSSEHERYLAEQHFKAPVVVKNYPKDIKAFYMRMNDDGKTVAAMDVLAPGIGEIIGGSQREERLAALDSRLEEMGLNKEDYWWYRDLRRYGTIPHSGFGLGFERLIAYV 445          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SHIDS (Asparaginyl-tRNA synthetase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=asnS PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.121e-51
Identity = 101/183 (55.19%), Postives = 128/183 (69.95%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AEA +K++   +L+   DDM+F A+  DK  ++RL       F ++ YT            G+ FEN V WG+DL+SEHERYL E  F+ PV+V NYPK IKAFYMRLN+D KTVAAMDVL P +GE+IGGSQREER DV+  R+ +MGL  E Y WY DLRR+GTV HSGFGLGFER+I+++
Sbjct:  266 AEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENC---GRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDVRMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYV 445          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SHEFN (Asparaginyl-tRNA synthetase OS=Shewanella frigidimarina (strain NCIMB 400) GN=asnS PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.465e-51
Identity = 102/183 (55.74%), Postives = 126/183 (68.85%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +KF    +L+   DD+ F  +  DK+ I RL+   S+ F ++ YT            GK FE  VEWGIDL SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGG+QREER DV+ +R+ +M L  E Y WY DLRR+GTV HSGFGLGFER++S++
Sbjct:  266 AEKMLKFAFSAVLEERMDDLNFFNERVDKTVIERLQAFVSSDFAQVDYTDAVEILKNC---GKKFEFAVEWGIDLQSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGAQREERLDVLDARLAEMDLSQEDYWWYRDLRRYGTVPHSGFGLGFERLVSYV 445          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_HAES2 (Asparaginyl-tRNA synthetase OS=Haemophilus somnus (strain 2336) GN=asnS PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.498e-51
Identity = 103/183 (56.28%), Postives = 129/183 (70.49%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++   +L+   DD++F  K+ DK+ I RL+   ++ F +I YT          K GK FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER +V+  RI +MGL  E Y WY DLRR+GTV H+GFGLGFER+I ++
Sbjct:  267 AEDMLKYVFRAVLNEREDDLKFFEKHVDKNVITRLKDFINSDFAQIDYTDAIDILL---KSGKAFEFPVSWGIDLSSEHERYLAEEYFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLEVLDKRIAEMGLKAEDYWWYRDLRRYGTVPHAGFGLGFERLIVYV 446          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_HAES1 (Asparaginyl-tRNA synthetase OS=Haemophilus somnus (strain 129Pt) GN=asnS PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.498e-51
Identity = 103/183 (56.28%), Postives = 129/183 (70.49%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++   +L+   DD++F  K+ DK+ I RL+   ++ F +I YT          K GK FE  V WGIDL+SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER +V+  RI +MGL  E Y WY DLRR+GTV H+GFGLGFER+I ++
Sbjct:  267 AEDMLKYVFRAVLNEREDDLKFFEKHVDKNVITRLKDFINSDFAQIDYTDAIDILL---KSGKAFEFPVSWGIDLSSEHERYLAEEYFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLEVLDKRIAEMGLKAEDYWWYRDLRRYGTVPHAGFGLGFERLIVYV 446          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_DESPS (Asparaginyl-tRNA synthetase OS=Desulfotalea psychrophila GN=asnS PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.498e-51
Identity = 98/183 (53.55%), Postives = 128/183 (69.95%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++   +L+HC  DM    K   K  I RL+ V +  F R+TYT            G+ F+  V+WGIDL SEHERYLTE  +++P+IV +YP  IK FYMR+N+D KTVAAMD+LVP +GEL+GGSQREERYD++  R+E  GL LE Y WYLDLR++GTV H+GFGLGFER++ F+
Sbjct:  249 AEEMLKYVLADVLEHCVTDMNLFDKFISKGIIERLQSVLAHDFARVTYTEAVDQLLA---SGQKFDFAVKWGIDLQSEHERYLTEQVYKRPLIVTDYPAAIKPFYMRMNEDGKTVAAMDILVPGIGELVGGSQREERYDLLAERMEAAGLDLEEYGWYLDLRKYGTVPHAGFGLGFERLVQFV 428          
The following BLAST results are available for this feature:
BLAST of CN192013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 301
Match NameE-valueIdentityDescription
SYN_ECO246.574e-5255.19Asparaginyl-tRNA synthetase OS=Escherichia coli O1... [more]
SYN_SHESW8.586e-5255.08Asparaginyl-tRNA synthetase OS=Shewanella sp. (str... [more]
SYN_SHESM8.586e-5254.55Asparaginyl-tRNA synthetase OS=Shewanella sp. (str... [more]
SYN_SHEPC8.586e-5255.08Asparaginyl-tRNA synthetase OS=Shewanella putrefac... [more]
SYN_ERWCT8.586e-5254.64Asparaginyl-tRNA synthetase OS=Erwinia carotovora ... [more]
SYN_SHIDS1.121e-5155.19Asparaginyl-tRNA synthetase OS=Shigella dysenteria... [more]
SYN_SHEFN1.465e-5155.74Asparaginyl-tRNA synthetase OS=Shewanella frigidim... [more]
SYN_HAES22.498e-5156.28Asparaginyl-tRNA synthetase OS=Haemophilus somnus ... [more]
SYN_HAES12.498e-5156.28Asparaginyl-tRNA synthetase OS=Haemophilus somnus ... [more]
SYN_DESPS2.498e-5153.55Asparaginyl-tRNA synthetase OS=Desulfotalea psychr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006D10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192013 ID=CN192013; Name=CN192013; organism=Citrus sinensis; type=EST; length=571bp
ACTGTGCGGAGGCATACGTGAAATTTATGTGTGACTGGTTACTTGACCAT
TGCTTTGACGACATGGAGTTTATGGCTAAAAATTATGATAAAAGTTGCAT
TAACCGTCTAAGAATGGTTGCTTCAACTCCCTTTGAACGCATAACATACA
CTGAAGCAGTAGAGCTACTAGAGGTTGCTGTGAAGGAGGGGAAACATTTT
GAGAATAAAGTGGAGTGGGGGATTGATTTGGCATCTGAGCATGAAAGATA
CTTAACTGAGGTCAAATTTCAGAAGCCTGTCATTGTGTACAACTATCCAA
AAGGAATCAAAGCATTTTACATGAGGCTCAATGATGACTTGAAGACTGTG
GCAGCTATGGATGTCCTTGTACCTAAGGTAGGAGAGTTAATTGGTGGGAG
CCAAAGGGAAGAGCGTTATGATGTAATCAAGAGCAGAATAGAGGACATGG
GACTCCCTCTTGAACCATACGAGTGGTACCTTGACCTGCGGCGCTTTGGG
ACAGTGAAACATAGTGGGTTTGGCTTAGGCTTTGAACGGATGATTTCTTT
TTTGCCACAGGCATCGACAAC
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