CN192013

Overview
NameCN192013
Unique NameCN192013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_CLOPS (Asparaginyl-tRNA synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=asnS PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.115e-50
Identity = 97/183 (53.01%), Postives = 130/183 (71.04%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++  +++D C +++ F  +  DK  + RL  V ++ F ++TYT          + GK FE  VEWGIDL +EHERYLTE  F+KPV V +YPK IKAFYMRLN+D KTVAAMD LVP +GE+IGGSQREER DV+K+R+ ++ L  E Y WYL+LR++G   HSGFGLGFER+I ++
Sbjct:  265 AENMLKYVIKYVMDECPEEIAFFNQFVDKGLLERLNHVVNSEFGKVTYTEAVKLLQ---ESGKEFEYPVEWGIDLQTEHERYLTEQIFKKPVFVTDYPKDIKAFYMRLNEDGKTVAAMDCLVPGIGEIIGGSQREERLDVLKARMAELNLNEEDYWWYLELRKYGETVHSGFGLGFERLIMYI 444          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_CLOPE (Asparaginyl-tRNA synthetase OS=Clostridium perfringens GN=asnS PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.115e-50
Identity = 97/183 (53.01%), Postives = 130/183 (71.04%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++  +++D C +++ F  +  DK  + RL  V ++ F ++TYT          + GK FE  VEWGIDL +EHERYLTE  F+KPV V +YPK IKAFYMRLN+D KTVAAMD LVP +GE+IGGSQREER DV+K+R+ ++ L  E Y WYL+LR++G   HSGFGLGFER+I ++
Sbjct:  265 AENMLKYVIKYVMDECPEEIAFFNQFVDKGLLERLNHVVNSEFGKVTYTEAVKLLQ---ESGKEFEYPVEWGIDLQTEHERYLTEQIFKKPVFVTDYPKDIKAFYMRLNEDGKTVAAMDCLVPGIGEIIGGSQREERLDVLKARMAELNLNEEDYWWYLELRKYGETVHSGFGLGFERLIMYI 444          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_CLOP1 (Asparaginyl-tRNA synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=asnS PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.115e-50
Identity = 97/183 (53.01%), Postives = 130/183 (71.04%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++  +++D C +++ F  +  DK  + RL  V ++ F ++TYT          + GK FE  VEWGIDL +EHERYLTE  F+KPV V +YPK IKAFYMRLN+D KTVAAMD LVP +GE+IGGSQREER DV+K+R+ ++ L  E Y WYL+LR++G   HSGFGLGFER+I ++
Sbjct:  265 AENMLKYVIKYVMDECPEEIAFFNQFVDKGLLERLNHVVNSEFGKVTYTEAVKLLQ---ESGKEFEYPVEWGIDLQTEHERYLTEQIFKKPVFVTDYPKDIKAFYMRLNEDGKTVAAMDCLVPGIGEIIGGSQREERLDVLKARMAELNLNEEDYWWYLELRKYGETVHSGFGLGFERLIMYI 444          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_CLOAB (Asparaginyl-tRNA synthetase OS=Clostridium acetobutylicum GN=asnS PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.115e-50
Identity = 98/183 (53.55%), Postives = 131/183 (71.58%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  VK++ ++++++  ++MEF     DK   +RL  V ++ F RITYT          K G+ FE  V+WGIDL +EHERYLT+  F+KP+ V +YPK IKAFYMR+NDD KTVAA D+LVP VGE+IGGSQREER  V++ R+E++ L  E Y WYL+LR++G  KHSG+GLGFERMI +L
Sbjct:  263 AEEMVKYIINFVMENAPEEMEFFNTRIDKGLFDRLHNVVNSEFGRITYTEAVDILE---KSGEKFEYPVKWGIDLQTEHERYLTDKVFKKPLFVTDYPKDIKAFYMRINDDNKTVAAADLLVPGVGEIIGGSQREERLAVLEKRMEELNLNKEDYWWYLELRKYGETKHSGYGLGFERMIMYL 442          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_SHEPA (Asparaginyl-tRNA synthetase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=asnS PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.762e-50
Identity = 101/187 (54.01%), Postives = 128/187 (68.45%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFLPQAS 566
            AE  +K+    +L+   DD+EF A+  +K+ I RL    ++ F +I YT          K+   FE  VEWGIDL SEHERYL E  F+ PV+V NYPK IKAFYMRLNDD KTVAAMDVL P +GE+IGG+QREER DV+ +R+ +M L  E Y WY DLRR+GTV H+GFGLGFER++S++   S
Sbjct:  266 AEDMLKYCFKAVLEERRDDLEFFAQRVEKTAIERLENFVTSDFAQIDYTDAIEILKACDKD---FEYDVEWGIDLHSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGAQREERLDVLDARLAEMELSQEDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVS 449          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_XANCP (Asparaginyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris GN=asnS PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.607e-50
Identity = 96/183 (52.46%), Postives = 128/183 (69.95%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE ++K++   +LD   DD+ F+A+  DK+ I++L    + PFE+I YT            GK F+  VEWG+DL +EHER+LTE    +PV+V NYP+ IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+   GL  E Y WY D RR+G+V H+GFGLGFER++ ++
Sbjct:  264 AEQFLKYLFRAVLDERGDDLAFLAERVDKNAISKLEAFINAPFEQIDYTEAVKLLQ---NSGKKFDFPVEWGLDLQTEHERWLTEEHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAQFGLDKEHYSWYRDFRRYGSVPHAGFGLGFERLVVYV 443          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_XANC8 (Asparaginyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=asnS PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.607e-50
Identity = 96/183 (52.46%), Postives = 128/183 (69.95%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE ++K++   +LD   DD+ F+A+  DK+ I++L    + PFE+I YT            GK F+  VEWG+DL +EHER+LTE    +PV+V NYP+ IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+   GL  E Y WY D RR+G+V H+GFGLGFER++ ++
Sbjct:  264 AEQFLKYLFRAVLDERGDDLAFLAERVDKNAISKLEAFINAPFEQIDYTEAVKLLQ---NSGKKFDFPVEWGLDLQTEHERWLTEEHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAQFGLDKEHYSWYRDFRRYGSVPHAGFGLGFERLVVYV 443          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_CYTH3 (Asparaginyl-tRNA synthetase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=asnS PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.607e-50
Identity = 94/183 (51.37%), Postives = 127/183 (69.40%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE ++K++  + LD+C DD+ F+ + YDK  I RL+ V  TPF R+ YT          ++   FE KVEWGIDL SEHERYL E  F+KPVI+ NYPK IKAFYM+ N+D KTV AMDVL P +GE+IGGSQRE+  + ++ R +++G+      WYL+ R+FG+  HSGFGLGFER++ F+
Sbjct:  264 AEEFLKYLVKYALDNCIDDLNFLNEMYDKELIERLKSVVETPFVRLNYTEAVDILIATKQK---FEYKVEWGIDLQSEHERYLVEKHFKKPVILTNYPKAIKAFYMKANEDGKTVRAMDVLFPGIGEIIGGSQREDNLEKLQERCKEVGIHENDIWWYLETRKFGSAPHSGFGLGFERLMLFV 443          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_CLOTH (Asparaginyl-tRNA synthetase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=asnS PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.607e-50
Identity = 96/183 (52.46%), Postives = 132/183 (72.13%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE  +K++ ++ L++  ++MEF     D + ++RL  + S+ F  +TYT          K  + FE  V+WG DL +EHERYLTE  F+KPV V +YPK IKAFYMRLNDD KTVAAMD+LVP VGE+IGGSQREER D +++R++++GL +E Y WYLDLRR+G+ +H+GFGLGFER I ++
Sbjct:  264 AEDMLKYIINYCLENAPEEMEFFNNFIDNTLLDRLNNIVSSDFAHVTYTEAIDILS---KADQKFEYPVKWGNDLQTEHERYLTEKVFKKPVFVTDYPKDIKAFYMRLNDDNKTVAAMDLLVPGVGEIIGGSQREERLDYLENRMKELGLKMEDYWWYLDLRRYGSTRHAGFGLGFERAIMYI 443          
BLAST of CN192013 vs. ExPASy Swiss-Prot
Match: SYN_XANC5 (Asparaginyl-tRNA synthetase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=asnS PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.711e-50
Identity = 96/183 (52.46%), Postives = 127/183 (69.40%), Query Frame = 3
Query:    6 AEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMISFL 554
            AE ++K++   +LD   DD+ F+A+  DK+ I +L    + PFE+I YT            GK F+  VEWG+DL +EHER+LTE    +PV+V NYP+ IKAFYMRLNDD KTVAAMDVL P +GE+IGGSQREER DV+ +R+   GL  E Y WY D RR+G+V H+GFGLGFER++ ++
Sbjct:  264 AEQFLKYLFRAVLDERGDDLAFLAERVDKNAITKLEAFINAPFEQIDYTEAVKLLQ---NSGKKFDFPVEWGLDLQTEHERWLTEEHIGRPVVVTNYPEHIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAQFGLDKEHYSWYRDFRRYGSVPHAGFGLGFERLVVYV 443          
The following BLAST results are available for this feature:
BLAST of CN192013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 301
Match NameE-valueIdentityDescription
SYN_CLOPS2.115e-5053.01Asparaginyl-tRNA synthetase OS=Clostridium perfrin... [more]
SYN_CLOPE2.115e-5053.01Asparaginyl-tRNA synthetase OS=Clostridium perfrin... [more]
SYN_CLOP12.115e-5053.01Asparaginyl-tRNA synthetase OS=Clostridium perfrin... [more]
SYN_CLOAB2.115e-5053.55Asparaginyl-tRNA synthetase OS=Clostridium acetobu... [more]
SYN_SHEPA2.762e-5054.01Asparaginyl-tRNA synthetase OS=Shewanella pealeana... [more]
SYN_XANCP3.607e-5052.46Asparaginyl-tRNA synthetase OS=Xanthomonas campest... [more]
SYN_XANC83.607e-5052.46Asparaginyl-tRNA synthetase OS=Xanthomonas campest... [more]
SYN_CYTH33.607e-5051.37Asparaginyl-tRNA synthetase OS=Cytophaga hutchinso... [more]
SYN_CLOTH3.607e-5052.46Asparaginyl-tRNA synthetase OS=Clostridium thermoc... [more]
SYN_XANC54.711e-5052.46Asparaginyl-tRNA synthetase OS=Xanthomonas campest... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006D10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192013 ID=CN192013; Name=CN192013; organism=Citrus sinensis; type=EST; length=571bp
ACTGTGCGGAGGCATACGTGAAATTTATGTGTGACTGGTTACTTGACCAT
TGCTTTGACGACATGGAGTTTATGGCTAAAAATTATGATAAAAGTTGCAT
TAACCGTCTAAGAATGGTTGCTTCAACTCCCTTTGAACGCATAACATACA
CTGAAGCAGTAGAGCTACTAGAGGTTGCTGTGAAGGAGGGGAAACATTTT
GAGAATAAAGTGGAGTGGGGGATTGATTTGGCATCTGAGCATGAAAGATA
CTTAACTGAGGTCAAATTTCAGAAGCCTGTCATTGTGTACAACTATCCAA
AAGGAATCAAAGCATTTTACATGAGGCTCAATGATGACTTGAAGACTGTG
GCAGCTATGGATGTCCTTGTACCTAAGGTAGGAGAGTTAATTGGTGGGAG
CCAAAGGGAAGAGCGTTATGATGTAATCAAGAGCAGAATAGAGGACATGG
GACTCCCTCTTGAACCATACGAGTGGTACCTTGACCTGCGGCGCTTTGGG
ACAGTGAAACATAGTGGGTTTGGCTTAGGCTTTGAACGGATGATTTCTTT
TTTGCCACAGGCATCGACAAC
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