CX301777
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX301777 vs. ExPASy Swiss-Prot
Match: UAP56_HUMAN (Spliceosome RNA helicase BAT1 OS=Homo sapiens GN=BAT1 PE=1 SV=1) HSP 1 Score: 315.464 bits (807), Expect = 1.118e-89 Identity = 155/210 (73.81%), Postives = 183/210 (87.14%), Query Frame = 2
Query: 23 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 652
GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERV ++
Sbjct: 150 GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA 359 HSP 2 Score: 34.6538 bits (78), Expect = 1.118e-89 Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 1
Query: 643 HIVINYDMPDSADTYLHRV 699
+I NYDMP+ +DTYLHRV
Sbjct: 357 NIAFNYDMPEDSDTYLHRV 375
BLAST of CX301777 vs. ExPASy Swiss-Prot
Match: UAP56_CANFA (Spliceosome RNA helicase BAT1 OS=Canis familiaris GN=BAT1 PE=3 SV=1) HSP 1 Score: 315.464 bits (807), Expect = 1.118e-89 Identity = 155/210 (73.81%), Postives = 183/210 (87.14%), Query Frame = 2
Query: 23 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 652
GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERV ++
Sbjct: 150 GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA 359 HSP 2 Score: 34.6538 bits (78), Expect = 1.118e-89 Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 1
Query: 643 HIVINYDMPDSADTYLHRV 699
+I NYDMP+ +DTYLHRV
Sbjct: 357 NIAFNYDMPEDSDTYLHRV 375
BLAST of CX301777 vs. ExPASy Swiss-Prot
Match: UAP56_BOVIN (Spliceosome RNA helicase BAT1 OS=Bos taurus GN=BAT1 PE=2 SV=1) HSP 1 Score: 315.464 bits (807), Expect = 1.118e-89 Identity = 155/210 (73.81%), Postives = 183/210 (87.14%), Query Frame = 2
Query: 23 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 652
GG++IK +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERV ++
Sbjct: 150 GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA 359 HSP 2 Score: 34.6538 bits (78), Expect = 1.118e-89 Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 1
Query: 643 HIVINYDMPDSADTYLHRV 699
+I NYDMP+ +DTYLHRV
Sbjct: 357 NIAFNYDMPEDSDTYLHRV 375
BLAST of CX301777 vs. ExPASy Swiss-Prot
Match: UAP56_CHICK (Spliceosome RNA helicase BAT1 OS=Gallus gallus GN=BAT1 PE=2 SV=1) HSP 1 Score: 313.923 bits (803), Expect = 3.237e-89 Identity = 154/210 (73.33%), Postives = 182/210 (86.67%), Query Frame = 2
Query: 23 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 652
GG+ +K +++LK CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE LDMRRDVQEIF+MTPH+KQVMMFSATLSKEIRPVC+KFMQDPMEI+VDDE KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM QEERL+RY+ FK+ +RILVAT+L GRG+DIERV ++
Sbjct: 150 GGLAVKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA 359 HSP 2 Score: 34.6538 bits (78), Expect = 3.237e-89 Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 1
Query: 643 HIVINYDMPDSADTYLHRV 699
+I NYDMP+ +DTYLHRV
Sbjct: 357 NIAFNYDMPEDSDTYLHRV 375
BLAST of CX301777 vs. ExPASy Swiss-Prot
Match: DDX39_RAT (ATP-dependent RNA helicase DDX39 OS=Rattus norvegicus GN=Ddx39 PE=2 SV=1) HSP 1 Score: 311.612 bits (797), Expect = 5.508e-89 Identity = 150/209 (71.77%), Postives = 180/209 (86.12%), Query Frame = 2
Query: 23 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 649
GG++IK +D+LK CP +VVGTPGRILAL R + L+L+NV+HF+LDECDKMLE LDMRRDVQEIF++TPH+KQ MMFSATLSKEIRPVC+KFMQDPME++VDDE KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM+QEERL+RY+ FK+ +RILVAT+L GRG+DIERV +
Sbjct: 149 GGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 357 HSP 2 Score: 36.1946 bits (82), Expect = 5.508e-89 Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 1
Query: 643 HIVINYDMPDSADTYLHRV 699
+IV NYDMP+ +DTYLHRV
Sbjct: 356 NIVFNYDMPEDSDTYLHRV 374
BLAST of CX301777 vs. ExPASy Swiss-Prot
Match: DDX39_MOUSE (ATP-dependent RNA helicase DDX39 OS=Mus musculus GN=Ddx39 PE=2 SV=1) HSP 1 Score: 311.612 bits (797), Expect = 5.508e-89 Identity = 150/209 (71.77%), Postives = 180/209 (86.12%), Query Frame = 2
Query: 23 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 649
GG++IK +D+LK CP +VVGTPGRILAL R + L+L+NV+HF+LDECDKMLE LDMRRDVQEIF++TPH+KQ MMFSATLSKEIRPVC+KFMQDPME++VDDE KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R L +LLVE NFP+I IH GM+QEERL+RY+ FK+ +RILVAT+L GRG+DIERV +
Sbjct: 149 GGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 357 HSP 2 Score: 36.1946 bits (82), Expect = 5.508e-89 Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 1
Query: 643 HIVINYDMPDSADTYLHRV 699
+IV NYDMP+ +DTYLHRV
Sbjct: 356 NIVFNYDMPEDSDTYLHRV 374
BLAST of CX301777 vs. ExPASy Swiss-Prot
Match: DDX39_HUMAN (ATP-dependent RNA helicase DDX39 OS=Homo sapiens GN=DDX39 PE=1 SV=2) HSP 1 Score: 309.686 bits (792), Expect = 2.080e-88 Identity = 148/209 (70.81%), Postives = 180/209 (86.12%), Query Frame = 2
Query: 23 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 649
GG++IK +++LK CP +VVGTPGRILAL R++ SLKNV+HF+LDECDKMLE LDMRRDVQEIF++TPH+KQ MMFSATLSK+IRPVC+KFMQDPME++VDDE KLTLHGL Q+Y+KL + EKNRKL DLLD L+FNQV+IFVKSV R L +LLVE NFP+I IH GM+QEERL+RY+ FK+ +RILVAT+L GRG+DIERV +
Sbjct: 149 GGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 357 HSP 2 Score: 36.1946 bits (82), Expect = 2.080e-88 Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 1
Query: 643 HIVINYDMPDSADTYLHRV 699
+IV NYDMP+ +DTYLHRV
Sbjct: 356 NIVFNYDMPEDSDTYLHRV 374
BLAST of CX301777 vs. ExPASy Swiss-Prot
Match: SUB2_SCHPO (ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe GN=uap56 PE=1 SV=3) HSP 1 Score: 303.138 bits (775), Expect = 3.872e-87 Identity = 147/211 (69.67%), Postives = 177/211 (83.89%), Query Frame = 2
Query: 23 GGVNIKIHKDLLKNEC--PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTL 649
GG+NIK + K++ P IVV TPGR+ AL R+K L + +V+HF+LDECDK+LES+DMRRD+QE+F+ TP KQVMMFSATLS EIRP+CKKFMQ+P+EIYVDDE KLTLHGL QHY+KL E KNRK+NDLLD+L+FNQVVIFVKSVSRA EL++LL ECNFPSICIH G+ QEER+ RYK FK+ +KRI VATD+ GRGIDIERV +
Sbjct: 156 GGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNI 366 HSP 2 Score: 38.5058 bits (88), Expect = 3.872e-87 Identity = 16/19 (84.21%), Postives = 18/19 (94.74%), Query Frame = 1
Query: 643 HIVINYDMPDSADTYLHRV 699
+IVINYDMPDS D+YLHRV
Sbjct: 365 NIVINYDMPDSPDSYLHRV 383
BLAST of CX301777 vs. ExPASy Swiss-Prot
Match: SUB2_ASPNC (ATP-dependent RNA helicase sub2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sub2 PE=3 SV=1) HSP 1 Score: 306.605 bits (784), Expect = 2.488e-86 Identity = 153/212 (72.17%), Postives = 181/212 (85.38%), Query Frame = 2
Query: 23 GGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 652
GG I+ +LL N+ P IVVGTPGR+ AL RDK LSL+NV+ F+LDECDKML+ +DMRRDVQEIF+ TP DKQVMMFSATLS+EIRPVCKKFM++P+E+YVDD+ KLTLHGL Q+YIKLSE EKNRKLN+LLD+L+FNQV+IFVKS RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+ L+
Sbjct: 162 GGTPIQKDVELLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPVCKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLA 373 HSP 2 Score: 32.3426 bits (72), Expect = 2.488e-86 Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 1
Query: 643 HIVINYDMPDSADTYLHRV 699
++ INYD+P AD+YLHRV
Sbjct: 371 NLAINYDLPADADSYLHRV 389
BLAST of CX301777 vs. ExPASy Swiss-Prot
Match: SUB2_ASPOR (ATP-dependent RNA helicase sub2 OS=Aspergillus oryzae GN=sub2 PE=3 SV=1) HSP 1 Score: 305.449 bits (781), Expect = 5.522e-86 Identity = 152/212 (71.70%), Postives = 181/212 (85.38%), Query Frame = 2
Query: 23 GGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVTLS 652
GG I+ ++L N+ P IVVGTPGR+ AL RDK LSL+NV+ F+LDECDKML+ +DMRRDVQEIF+ TP DKQVMMFSATLS+EIRPVCKKFM++P+E+YVDD+ KLTLHGL Q+YIKLSE EKNRKLN+LLD+L+FNQV+IFVKS RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+ L+
Sbjct: 163 GGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPVCKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLA 374 HSP 2 Score: 32.3426 bits (72), Expect = 5.522e-86 Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 1
Query: 643 HIVINYDMPDSADTYLHRV 699
++ INYD+P AD+YLHRV
Sbjct: 372 NLAINYDLPADADSYLHRV 390 The following BLAST results are available for this feature:
BLAST of CX301777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX301777 ID=CX301777; Name=CX301777; organism=Citrus sinensis; type=EST; length=699bpback to top |