CN191925 | Citrus Genome Database

Overview


Name	CN191925
Unique Name	CN191925
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	353

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Rind cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.271e-31
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 60.8474 bits (146), Expect = 7.271e-31
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CN191925 vs. ExPASy Swiss-Prot

BLAST of CN191925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86


Match Name	E-value	Identity	Description
UBIQ_LUPAL	7.271e-31	100.00	Ubiquitin OS=Lupinus albus PE=3 SV=1	[more]
UBIQ_LINUS	7.271e-31	100.00	Ubiquitin OS=Linum usitatissimum PE=3 SV=1	[more]
UBIQ_HORVU	7.271e-31	100.00	Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1	[more]
UBIQ_HELAN	7.271e-31	100.00	Ubiquitin OS=Helianthus annuus PE=3 SV=1	[more]
UBIQ_DESAN	7.271e-31	100.00	Ubiquitin OS=Deschampsia antarctica PE=2 SV=1	[more]
UBIQ_DAUCA	7.271e-31	100.00	Ubiquitin OS=Daucus carota PE=3 SV=1	[more]
UBIQ_BRARA	7.271e-31	100.00	Ubiquitin OS=Brassica rapa PE=3 SV=1	[more]
UBIQ_AVESA	7.271e-31	100.00	Ubiquitin OS=Avena sativa PE=1 SV=1	[more]
UBIQ_AVEFA	7.271e-31	100.00	Ubiquitin OS=Avena fatua PE=3 SV=1	[more]
UBIQ_ASPOF	7.271e-31	100.00	Ubiquitin OS=Asparagus officinalis PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS06_0006B06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006B06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN191925 ID=CN191925; Name=CN191925; organism=Citrus sinensis; type=EST; length=353bp
GAGGCAACAAATCTCTCCAATTGTCTCGCTAAGAAACTTTTAAACGATGC
AGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAG
AGCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGG
AATCCCTCCGGACCAGCAGCGTCTGATCTTCGCCGGAAACAGCTCGAAGA
CGGCCGCACCTTGGCCGATTACAATATCCAAAAGGAATCGACGCTTCATC
TTGTGCTTCGTCTCCGTGGAGGCATGCAGATCTTCGTGAAAACCCTAACC
GGCAAGACCATTACTCTCGAAGTTGAGAGCTCCGACACGATCGACAACGT
CAA