CN191925 | Citrus Genome Database

Overview


Name	CN191925
Unique Name	CN191925
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	353

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Rind cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.730e-29
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 59.6918 bits (143), Expect = 1.730e-29
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.730e-29
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 59.6918 bits (143), Expect = 1.730e-29
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.730e-29
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 59.6918 bits (143), Expect = 1.730e-29
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.730e-29
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 59.6918 bits (143), Expect = 1.730e-29
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.730e-29
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 59.6918 bits (143), Expect = 1.730e-29
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.730e-29
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 59.6918 bits (143), Expect = 1.730e-29
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.730e-29
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 59.6918 bits (143), Expect = 1.730e-29
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.730e-29
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 59.6918 bits (143), Expect = 1.730e-29
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.730e-29
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 59.6918 bits (143), Expect = 1.730e-29
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

BLAST of CN191925 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.730e-29
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 2

Query:   47 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 187
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 47

HSP 2 Score: 59.6918 bits (143), Expect = 1.730e-29
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 1

Query:  187 KQLEDGRTLADYNIQKESTLHLVLRLRGG 273
            KQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CN191925 vs. ExPASy Swiss-Prot

BLAST of CN191925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86


Match Name	E-value	Identity	Description
UBIQ_RABIT	1.730e-29	95.74	Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1	[more]
UBIQ_PONPY	1.730e-29	95.74	Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2	[more]
UBIQ_PLUXY	1.730e-29	95.74	Ubiquitin OS=Plutella xylostella PE=3 SV=1	[more]
UBIQ_PIG	1.730e-29	95.74	Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1	[more]
UBIQ_PANTR	1.730e-29	95.74	Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2	[more]
UBIQ_OPHHA	1.730e-29	95.74	Ubiquitin OS=Ophiophagus hannah PE=3 SV=1	[more]
UBIQ_MOUSE	1.730e-29	95.74	Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1	[more]
UBIQ_MANSE	1.730e-29	95.74	Ubiquitin OS=Manduca sexta PE=3 SV=1	[more]
UBIQ_MACFA	1.730e-29	95.74	Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=...	[more]
UBIQ_ICTPU	1.730e-29	95.74	Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS06_0006B06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006B06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN191925 ID=CN191925; Name=CN191925; organism=Citrus sinensis; type=EST; length=353bp
GAGGCAACAAATCTCTCCAATTGTCTCGCTAAGAAACTTTTAAACGATGC
AGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAG
AGCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGG
AATCCCTCCGGACCAGCAGCGTCTGATCTTCGCCGGAAACAGCTCGAAGA
CGGCCGCACCTTGGCCGATTACAATATCCAAAAGGAATCGACGCTTCATC
TTGTGCTTCGTCTCCGTGGAGGCATGCAGATCTTCGTGAAAACCCTAACC
GGCAAGACCATTACTCTCGAAGTTGAGAGCTCCGACACGATCGACAACGT
CAA