CX301640

Overview
NameCX301640
Unique NameCX301640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301640 vs. ExPASy Swiss-Prot
Match: AGC1_YEAST (Mitochondrial aspartate-glutamate transporter AGC1 OS=Saccharomyces cerevisiae GN=AGC1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 51/147 (34.69%), Postives = 70/147 (47.62%), Query Frame = 3
Query:    3 KGFYTGYFSTILRELPFSFIQFPLYEWMKKVIERSILNNERK---VRSYEAAVCGSISGGIAAALTTPLDVIKTRLMLGKDKHGVAYNGMIDTIRRISLEANDVXXXXXXXXXXXXLQRQVRVFFAGLGPRVMWISIGGFIFFGAYE 434
            +G Y G  + ++R++PFS I FP Y  +KK +     N++ K   ++++E    G+I+G  AA LTTP DVIKTRL +   K    YNG+   IR I  E                     R FF G G RV+  S        AYE
Sbjct:  680 RGLYNGVAACLMRDVPFSAIYFPTYAHLKKDLFDFDPNDKTKRNRLKTWELLTAGAIAGMPAAFLTTPFDVIKTRLQIDPRKGETKYNGIFHAIRTILKE------------------ESFRSFFKGGGARVLRSSPQFGFTLAAYE 808          
BLAST of CX301640 vs. ExPASy Swiss-Prot
Match: MFRN_DICDI (Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 46/157 (29.30%), Postives = 75/157 (47.77%), Query Frame = 3
Query:    3 KGFYTGYFSTILRELPFSFIQFPLYEWMKKVIERSILNNERKVRSYEA---AVCGSISGGIAAALTTPLDVIKTRLMLGKD----------KHGVAYNGMIDTIRRISLEANDVXXXXXXXXXXXXLQRQVRVFFAGLGPRVMWISIGGFIFFGAYE 434
            +GFY+GY +T++  +P++ + F  YE +KK+I+    N   + RSY+     V G  +G +AAA T P DV+KTRL    D          K    Y GM+D ++ I +E                    +  +  G+ PR+++ S+   I +  YE
Sbjct:  162 RGFYSGYTTTLVMNVPYNIVYFASYESLKKIIQPWFNNKNPEERSYQLIDHLVAGGGAGMLAAAFTNPFDVVKTRLQTQSDFIASSTINSAKSIKRYGGMMDAMKTIWIEEG------------------MDGYLRGMKPRMVFHSMSSAIVWSVYE 300          
The following BLAST results are available for this feature:
BLAST of CX301640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AGC1_YEAST2.622e-1234.69Mitochondrial aspartate-glutamate transporter AGC1... [more]
MFRN_DICDI5.842e-1229.30Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=... [more]

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Properties
Property NameValue
Genbank descriptionC08011H12SK PhyRootSw1 Citrus sinensis cDNA clone C08011H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301640 ID=CX301640; Name=CX301640; organism=Citrus sinensis; type=EST; length=610bp
GGAAGGGTTTCTATACAGGATATTTCTCGACCATTCTGAGAGAGTTGCCC
TTCTCTTTCATCCAGTTCCCTCTCTATGAGTGGATGAAGAAAGTGATAGA
AAGATCAATCTTAAATAATGAAAGGAAGGTGCGGTCCTATGAGGCAGCGG
TCTGTGGCTCGATCTCTGGAGGCATTGCTGCTGCTCTGACGACGCCATTA
GATGTCATCAAGACAAGATTAATGTTAGGCAAGGACAAGCATGGTGTGGC
ATATAATGGTATGATCGATACGATTCGAAGGATTTCTCTAGAAGCGAATG
ATGTCAGTACCTCCCCCTCTTCCCCCACTACCTCTACACCTCTGCAGCGT
CAAGTTCGTGTCTTCTTCGCAGGGCTCGGACCTCGTGTCATGTGGATTAG
TATTGGAGGATTCATATTCTTCGGTGCCTATGAACAATCAGCGCGCCTTC
TACAACACCTCCTCTGAGGATGTGATGTGAGGTGTATTAATAGGCAGTGT
AGTGTAGTGTAGTGATAGGATTAGAAGGGATCTCAATGAATATCAATGAA
TATGTATGATGTCTTAGTTATTTTAATTAATGAACTCGCTAACAAAAAAA
AAAAAAAAAA
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