CX301615

Overview
NameCX301615
Unique NameCX301615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301615 vs. ExPASy Swiss-Prot
Match: CARDF_CYNCA (Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.283e-16
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 1
Query:   22 YWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASG 177
            YWQF +GDVLI  ++TG+C+ GC A ADSGTSLL+GPT I+TQINHAIGA+G
Sbjct:  163 YWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGANG 214          

HSP 2 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  574 FDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 738
            F L P +Y+L+   G A QCISGFTA D A   GPLWILGDVFM  YHTVFDYGN
Sbjct:  222 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGN 272          
BLAST of CX301615 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.600e-16
Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  499 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEY-VLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 738
            +GE AV+C NL+ MP+V+FTI G  + L+P  Y +L+  +G+   C SGF   D+ PP GPLWILGDVF+ ++++VFD GN
Sbjct:  312 DGEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQF-CSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGN 391          
BLAST of CX301615 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:  487 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGR 711
            +P   GE  + C+ +SS+P V+  +GGK + L+P +Y L+V +     C+SGF   D+ PP GPLWILGDVF+GR
Sbjct:  291 VPLIQGEYMIPCEKVSSLPQVTLKLGGKDYTLSPEDYTLKVSQAGTTVCLSGFMGMDIPPPGGPLWILGDVFIGR 365          
BLAST of CX301615 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  487 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 738
            +P   GE  + C  +  +P VSF +GG  F+L  ++YV++        C+SGF A DV PP GP WILGDVF+G Y  VFD G+
Sbjct:  306 IPLLAGEYIILCSEIPKLPAVSFLLGGVWFNLTAHDYVIQTTRNGVRLCLSGFQALDVPPPAGPFWILGDVFLGTYVAVFDRGD 389          
BLAST of CX301615 vs. ExPASy Swiss-Prot
Match: CARDH_CYNCA (Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 1
Query:   22 YWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 174
            YWQF +GDVLI  ++TG+C+ GC A ADSGTSLL+GPT I+TQINHAIGA+
Sbjct:  149 YWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGAN 199          

HSP 2 Score: 73.9442 bits (180), Expect = 9.885e-13
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  571 VFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 738
            VF L P +Y+L+   G A QCISGFTA D A   GPLWILGDVFM  YHTVFDYGN
Sbjct:  205 VFGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGN 256          
BLAST of CX301615 vs. ExPASy Swiss-Prot
Match: CARDG_CYNCA (Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 1
Query:   22 YWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 174
            YWQF +GDVLI  ++TG+C+ GC A ADSGTSLL+GPT I+TQINHAIGA+
Sbjct:  149 YWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGAN 199          

HSP 2 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  574 FDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 738
            F L P +Y+L+   G A QCISGFTA D A   GPLWILGDVFM  YHTVFDYGN
Sbjct:  207 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGN 257          
BLAST of CX301615 vs. ExPASy Swiss-Prot
Match: CARDE_CYNCA (Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 1
Query:   22 YWQFEMGDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 174
            YWQF +GDVLI  ++TG+C+ GC A ADSGTSLL+GPT I+TQINHAIGA+
Sbjct:  107 YWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGAN 157          

HSP 2 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  574 FDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 738
            F L P +Y+L+   G A QCISGFTA D A   GPLWILGDVFM  YHTVFDYGN
Sbjct:  165 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGN 215          
BLAST of CX301615 vs. ExPASy Swiss-Prot
Match: CATE_MOUSE (Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.779e-15
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  499 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVL-EVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 738
            +GE AVDC  L +MPNV+F I    + L P +Y+L ++ +G+   C SGF   D+ PP GPLWILGDVF+ ++++VFD GN
Sbjct:  308 DGEYAVDCATLDTMPNVTFLINEVSYTLNPTDYILPDLVDGMQF-CGSGFQGLDIPPPAGPLWILGDVFIRQFYSVFDRGN 387          
BLAST of CX301615 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 1
Query:  466 VNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 738
            +N+     P  NG+  + C    ++P VSF +GG  F+L   +YV+++ +     C+ GF A D+  P GPLWILGDVF+G Y  VFD G+
Sbjct:  294 LNKAIGGYPFLNGQYFIQCSKTPTLPPVSFHLGGVWFNLTGQDYVIKILQSDVGLCLLGFQALDIPKPAGPLWILGDVFLGPYVAVFDRGD 384          
BLAST of CX301615 vs. ExPASy Swiss-Prot
Match: CATD_DICDI (Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.087e-15
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  499 NGESAV-DCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 738
            NGE    DC  ++++PNV+ T+ G+ F L P EYVLEV E    +C+SGF   ++    G  WILGDVF+  Y+TVFD+GN
Sbjct:  294 NGEGVFSDCSVINTLPNVTITVAGREFVLTPKEYVLEVTEFGKTECLSGFMGIEL--NMGNFWILGDVFISAYYTVFDFGN 372          
The following BLAST results are available for this feature:
BLAST of CX301615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CARDF_CYNCA3.283e-1671.15Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CATE_HUMAN5.600e-1650.62Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]
CATD_SHEEP7.314e-1646.67Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]
NAPSA_HUMAN9.552e-1645.24Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CARDH_CYNCA1.629e-1570.59Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDG_CYNCA1.629e-1570.59Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDE_CYNCA1.629e-1570.59Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CATE_MOUSE2.779e-1549.38Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1[more]
NAPSA_MOUSE4.741e-1540.66Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
CATD_DICDI8.087e-1548.15Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE... [more]

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Properties
Property NameValue
Genbank descriptionC08011F11SK PhyRootSw1 Citrus sinensis cDNA clone C08011F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301615 ID=CX301615; Name=CX301615; organism=Citrus sinensis; type=EST; length=739bp
AATTCGGCACGAGGGAAAGGCTATTGGCAGTTTGAAATGGGTGATGTCCT
GATTGATGGTGAAACAACTGGATATTGTTCCACTGGTTGTAACGCAATTG
CTGATTCTGGAACCTCGTTGTTGGCGGGCCCAACAACCATAATTACACAA
ATTAATCATGCCATTGGAGCTTCTGGTGTCATAAGCCAAGAATGCAAGAC
TCTGGTTGACCAATATGGAAAAACCATATTGGAAATGCTGATAGCTGAGA
CACAACCACAAAAGATCTGCTCTCAGATGGGTCTATGTACTTTTGATGGG
ACTCGAGGTTTTAGCATGGGAATTGAGAGTGTCATAGATAAGAGCTCAGA
CAAGTCATCTGATGGTGTGCATGACTCTGCTATGTGCTCTGCTTGTGAGA
TGGCGGTCATATGGATGCAGAACAAGCTGAGGAGAAATGAGACAGCAGAT
CAAATCTTGAATTATGTAAATCAGCTTTGTGACCGTCTGCCCAGTCCAAA
TGGAGAATCAGCTGTTGATTGTGACAATTTATCTTCCATGCCCAATGTTT
CATTTACAATTGGTGGCAAAGTATTTGACCTTGCACCGAATGAGTATGTT
CTTGAAGTGGGAGAGGGAGTTGCAGCCCAATGCATCAGTGGATTTACTGC
TTTCGATGTGGCCCCTCCTCGTGGTCCTCTCTGGATTCTGGGAGATGTTT
TCATGGGTCGCTATCACACTGTGTTCGACTACGGCAACT
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