CN191754

Overview
NameCN191754
Unique NameCN191754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA2_HUMAN (60S acidic ribosomal protein P2 OS=Homo sapiens GN=RPLP2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = -1
Query:  376 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 561
            M+ VA+YLL  LGGN+SPSA DIK IL SVG + +D+RL  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKL 62          
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA25_ARATH (60S acidic ribosomal protein P2-5 OS=Arabidopsis thaliana GN=RPP2E PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  376 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 561
            MKVVAAYLL  L GN +PS  D+K I+ SVGA+ +  +++L  S +K +D+TELIA GREK+
Sbjct:    1 MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGREKM 62          
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA2_BOVIN (60S acidic ribosomal protein P2 OS=Bos taurus GN=RPLP2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = -1
Query:  376 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 561
            M+ VA+YLL  LGGN+SPSA DIK IL SVG + +D+RL  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELHGKNIEDVIAQGIGKL 62          
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA2_RAT (60S acidic ribosomal protein P2 OS=Rattus norvegicus GN=Rplp2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  376 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 561
            M+ VA+YLL  LGGN++PSA DIK IL SVG + +D RL  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSNPSAKDIKKILDSVGIEADDERLNKVISELNGKNIEDVIAQGVGKL 62          
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA2_RHOGU (60S acidic ribosomal protein P2 OS=Rhodotorula glutinis PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = -1
Query:  376 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 561
            MK VAAYLL V  GNTSPSA+D+K +L +     ++ RL +L+ E++GKD+ E+IA G +KL
Sbjct:    1 MKHVAAYLLLVSAGNTSPSAEDVKKVLAAADIQADEERLSVLIKELEGKDVNEVIAEGSKKL 62          
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA2_PIG (60S acidic ribosomal protein P2 OS=Sus scrofa GN=RPLP2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = -1
Query:  376 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 561
            M+ VA+YLL  LGGNTSPSA DIK  L SVG + + +RL  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNTSPSAKDIKKXLDSVGIEADXDRLNKVISELNGKNIEDVIAQGIGKL 62          
BLAST of CN191754 vs. ExPASy Swiss-Prot
Match: RLA2_ARTSA (60S acidic ribosomal protein P2 OS=Artemia salina PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = -1
Query:  376 MKVVAAYLLPVLGGNTSPSADDIKGILGSVGADCEDNRLELLLSEVKGKDITELIASGREKL 561
            M+ VAAYLL  L GN  PS  DI+ IL SVG +C  ++L+ +++E+KGKD+  LIA G+ KL
Sbjct:    1 MRYVAAYLLAALSGNADPSTADIEKILSSVGIECNPSQLQKVMNELKGKDLEALIAEGQTKL 62          
The following BLAST results are available for this feature:
BLAST of CN191754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RLA2_HUMAN8.760e-1256.4560S acidic ribosomal protein P2 OS=Homo sapiens GN... [more]
RLA25_ARATH8.760e-1254.8460S acidic ribosomal protein P2-5 OS=Arabidopsis t... [more]
RLA2_BOVIN1.144e-1156.4560S acidic ribosomal protein P2 OS=Bos taurus GN=R... [more]
RLA2_RAT2.549e-1154.8460S acidic ribosomal protein P2 OS=Rattus norvegic... [more]
RLA2_RHOGU3.329e-1151.6160S acidic ribosomal protein P2 OS=Rhodotorula glu... [more]
RLA2_PIG7.416e-1154.8460S acidic ribosomal protein P2 OS=Sus scrofa GN=R... [more]
RLA2_ARTSA7.416e-1151.6160S acidic ribosomal protein P2 OS=Artemia salina ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005M06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191754 ID=CN191754; Name=CN191754; organism=Citrus sinensis; type=EST; length=573bp
GAGGAAATAATAGAAAATGATGGTCGCCAGATATATAAATCTCTGAGCAG
GCATAACAAAGCAGCATATCAATATGGAGCCACAACTTAACACGGTAAAA
GTTTCATCTAAGGATTATATAAACTAAAAACTACAGAACTCCAAAATAAC
AAAACTTTTAAGTCCAGTTAGAAGCTCCCAATTGAGGAGAAAGAGGTGAA
AAAAACGCTGAAGAGCTCTCTAGTCGAAAAGACTGAAACCCATATCATCA
TCAGATTCTTCTTTCTCCTCCACTTTCTCCTCTTTCTTGGCCTCAGCAGC
AGCTGGGGCAGCGCCTGCACCACCGGCAGATGGAGCAGCAGCAACTGCAA
CTCCACCACCAGAAGGCACTGAGGCCAATTTCTCCCGCCCAGATGCAATA
AGCTCAGTTATGTCTTTGCCTTTAACTTCTGATAGAAGGAGCTCAAGCCT
ATTGTCCTCACAATCAGCTCCAACAGAGCCAAGGATTCCCTTAATATCAT
CGGCGGAAGGGCTGGTATTTCCTCCCAAAACAGGCAACAGATATGCTGCC
ACCACCTTCATTTCTTTCTTTCT
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