CX301596

Overview
NameCX301596
Unique NameCX301596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.641e-18
Identity = 41/102 (40.20%), Postives = 67/102 (65.69%), Query Frame = 2
Query:  275 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQE-------VPESRREGAITK 559
            ++++T++ F   V+ ++ PVLV+F A WCGPCR+V+P V+ +A+EY   + VVKI+ D NP +  EY +  +PTL++FK+G+        VP+S  E  + K
Sbjct:    3 VSQVTDASFKQEVINNDLPVLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKSGERVDTVIGAVPKSTLESTLNK 104          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_SYNY3 (Thioredoxin OS=Synechocystis sp. (strain PCC 6803) GN=trxA PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  269 SGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 592
            S   +++++ F   VL SE PVLV+F A WCGPCR+VAP V+ ++Q+Y  ++ VVK++ D NP    +Y +  +PTL++FK GQ V      GA+ K  L   ++  L
Sbjct:    2 SATPQVSDASFKEDVLDSELPVLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNTASQYGIRSIPTLMIFKGGQRV--DMVVGAVPKTTLASTLEKYL 107          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_PSEAE (Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.210e-18
Identity = 42/106 (39.62%), Postives = 71/106 (66.98%), Query Frame = 2
Query:  266 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYID 583
            S  I  +T++ F   VLK++ PVLV++ A WCGPC+++AP ++ +A++Y  +L V K++ D N     +Y V G+PTL+LFK+G    E+ + GA++K +L  ++D
Sbjct:    2 SEHIVNVTDASFEQDVLKADGPVLVDYWAEWCGPCKMIAPVLDEVARDYQGKLKVCKLNIDENQDTPPKYGVRGIPTLMLFKDGN--VEATKVGALSKSQLAAFLD 105          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.110e-18
Identity = 51/139 (36.69%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  191 SRTNLSLKSYNNSLPKLAIRVRCGASSGITEIT---ESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLDS 598
            S+  LS+ S +   P  A R  C  S+ + E+    E  + + VL SE PVLVEF A WCGPCR++AP ++ LA+EY  ++   K++ D +P +   Y +  +PT+++FKNG++  +    GA+ K  L   ID  + S
Sbjct:   38 SKPRLSVASPSPLRP--ASRFACQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEK--KESVIGAVPKTTLATIIDKYVSS 172          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_STRAU (Thioredoxin (Fragment) OS=Streptomyces aureofaciens GN=trxA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.059e-17
Identity = 41/104 (39.42%), Postives = 66/104 (63.46%), Query Frame = 2
Query:  281 EITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 592
            ++T + F + VL+S++PVLV F   WCGPC++VAP ++ +A EY  ++ V K++ D NPQL  +Y V  +PT ++FK G+    +   GA  K +L  ++D  L
Sbjct:    5 KVTNATFKSDVLESDKPVLVHFEGPWCGPCKMVAPVLDEIANEYEGKVKVAKVNTDENPQLASQYGVRSIPTRLMFKGGEVA--ANMVGAAPKTRLAAFLDASL 106          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.383e-17
Identity = 38/82 (46.34%), Postives = 60/82 (73.17%), Query Frame = 2
Query:  281 EITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEV 526
            ++T+  F   V+ SE+ VLV+F A WCGPCR+++P ++ LAQEY +++ +VKI+ D NP +  EY +  +PTL+LFK+G+ V
Sbjct:    6 QVTDFSFEKEVVNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRV 87          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.807e-17
Identity = 44/127 (34.65%), Postives = 77/127 (60.63%), Query Frame = 2
Query:  215 SYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLD 595
            ++  + P+ ++ VR  A +    + +  F N VL+S  PVLV+F A WCGPCR++AP V+ +A EY D+L  VK++ D +P +  EY +  +PT+++FK G++       GA+ K  + + ++  L+
Sbjct:   20 AFARAAPRRSVVVRAEAGA----VNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKC--ETIIGAVPKATIVQTVEKYLN 140          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.807e-17
Identity = 42/108 (38.89%), Postives = 69/108 (63.89%), Query Frame = 2
Query:  275 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLDS 598
            I+++ ++ F   V+ S +PVLV+F A WCGPCR++A  ++ +A +Y D+L VVK++ D NP +  EY +  +PT+++F NG++V      GA+ KL L   +   L S
Sbjct:    3 ISQVIDTSFHEEVINSRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKV--DTVVGAVPKLTLLNTLQKHLKS 108          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 46/120 (38.33%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  251 VRCGASSGITEI---TESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRRE---GAITKLKLKEYIDTLL 592
            V C AS  + E+    +S +   VL+SE PV+V+F A WCGPC+L+AP ++ LA+EY  ++ V K++ D  P +  +Y +  +PT++ FKNG+     R+E   GA+ K  L + I+  L
Sbjct:   65 VVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGE-----RKESIIGAVPKSTLTDSIEKYL 179          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_RHOSH (Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 45/103 (43.69%), Postives = 65/103 (63.11%), Query Frame = 2
Query:  284 ITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 592
            +T++ F   V KS+ PV+V+F A WCGPCR + PA+E L++EY  ++ +VK++ D NP+      V G+P L LFKNGQ V  S + GA  K  L  +I + L
Sbjct:    6 VTDATFDTEVRKSDVPVVVDFWAEWCGPCRQIGPALEELSKEYAGKVKIVKVNVDENPESPAMLGVRGIPALFLFKNGQVV--SNKVGAAPKAALATWIASAL 106          
The following BLAST results are available for this feature:
BLAST of CX301596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
THIO_PORPU3.641e-1840.20Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]
THIO_SYNY34.755e-1840.74Thioredoxin OS=Synechocystis sp. (strain PCC 6803)... [more]
THIO_PSEAE6.210e-1839.62Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3... [more]
TRXM_ORYSJ8.110e-1836.69Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
THIO_STRAU1.059e-1739.42Thioredoxin (Fragment) OS=Streptomyces aureofacien... [more]
THIO_CYACA1.383e-1746.34Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
TRXM_CHLRE1.807e-1734.65Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
THIO_GRIPA1.807e-1738.89Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
TRXM_SPIOL3.082e-1738.33Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
THIO_RHOSH3.082e-1743.69Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=... [more]

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Properties
Property NameValue
Genbank descriptionC08011E03SK PhyRootSw1 Citrus sinensis cDNA clone C08011E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301596 ID=CX301596; Name=CX301596; organism=Citrus sinensis; type=EST; length=754bp
ATTCGGCACGAGGTAAAAATCTTTAATCACTTGCAAAATGGATATCGTCT
TCTCCAACTCCACTTTATTGTTCAGACAACAACCACTGGTTGCTCCTGTT
CGTACAGTTACTGGGACCCACAGGCAACAGAACATCATCACCAGCGCTAC
AACAACAACAACGTCGTCAAAGAATCAGCTATTGTTCGGGTCTCGAACGA
ACCTCTCACTAAAGTCTTATAATAATTCGCTTCCCAAGTTGGCAATACGC
GTACGCTGCGGTGCTAGCAGTGGCATAACGGAGATTACCGAAAGTGAGTT
CCCAAACACGGTCTTGAAATCTGAGCGTCCGGTTCTTGTCGAGTTCGTGG
CCAATTGGTGCGGTCCTTGCCGCTTGGTTGCTCCCGCCGTCGAATGGCTC
GCCCAGGAATACGGAGACAGATTGACTGTCGTAAAGATTGATCATGACGC
AAACCCACAACTAATAGAGGAATACAAAGTTTATGGATTGCCGACCTTGA
TTCTCTTCAAGAATGGACAGGAAGTTCCGGAAAGCAGGAGGGAAGGTGCA
ATTACTAAGTTGAAGCTTAAAGAGTATATTGATACTCTTTTAGATTCAAT
CTCAGTGGCTTAGCCCTCTTTTGAACATGCTCAGCAAATTATGCTCGTTC
TTCAACAGATTTTGACATCATTGGCAAAGACGAATATGGGTAAATATTTA
CTTTTTCCTTATGTAAATCTGTATCATTCGTTACAGTATCCGTGGATGTA
TTCA
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