CX301596

Overview
NameCX301596
Unique NameCX301596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 37/84 (44.05%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  275 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEV 526
            ++++T++ F   V+ +  PVLV+F A WCGPCR+V+P V+ +A+EY   + VVKI+ D NP +  EY +  +PTL++FK G+ V
Sbjct:    3 VSQVTDASFKQEVINNNLPVLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERV 86          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_CHRVI (Thioredoxin OS=Chromatium vinosum GN=trxA PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.025e-17
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 2
Query:  266 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDT 586
            S  I  +T+  F   V KS  PVLV++ A+WCGPC++ AP  + +A EY  R+   K + D NP     Y   G+PTL+LF+ G+   E+ + GA++K +L  ++D+
Sbjct:    1 SDSIVHVTDDSFEEEVXKSPDPVLVDYWADWCGPCKMXAPVXDEIADEYAGRVKXAKXNXDENPNTPPRYGXRGIPTLMLFRGGE--VEATKVGAVSKSQLTAFLDS 105          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_RICPR (Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17
Identity = 34/83 (40.96%), Postives = 61/83 (73.49%), Query Frame = 2
Query:  275 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQE 523
            +  +T+S F N VL+S+ PV+V+F A WCGPC+++ P ++ +++E  D++ V+K++ D NP+   EY +  +PT++LFKNG++
Sbjct:    2 VNNVTDSSFKNEVLESDLPVMVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGIRSIPTIMLFKNGEQ 84          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_STRCO (Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=1 SV=4)

HSP 1 Score: 87.8113 bits (216), Expect = 6.866e-17
Identity = 36/82 (43.90%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  275 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQ 520
            +  +T+  F   VLK+++PVLV+F A WCGPCR +AP++E +A EYGD++ +VK++ D NP    +Y V  +PTL +++ G+
Sbjct:    5 LKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGE 86          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_BUCAP (Thioredoxin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trxA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.171e-16
Identity = 43/103 (41.75%), Postives = 71/103 (68.93%), Query Frame = 2
Query:  275 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYID 583
            I E+T+  F   VL+ +  VLV+F A WC PC+++AP +E +AQEY +++ V K++ + NP     Y + G+P L+LF +G+EV  + + GAI+KL+LK+++D
Sbjct:    4 IIELTDQNFEKEVLEHKSFVLVDFWAEWCNPCKILAPILEEIAQEYFNKIKVGKLNIEKNPNTAPIYSIRGIPALLLF-HGREV-LATKVGAISKLQLKDFLD 104          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_BUCAI (Thioredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trxA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.171e-16
Identity = 39/103 (37.86%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  275 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYID 583
            I E+T+  F   VL S+   LV+F A WC PC+++AP +E +++EY +++ V K++ + NP     Y +  +PTL+LF N + +  + + GA++KL+LKE++D
Sbjct:    4 IIELTDQNFEEQVLNSKSFFLVDFWAQWCNPCKILAPILEEISKEYSNKVIVGKLNIEENPNTAPVYSIRSIPTLLLFNNSEVL--ATKVGAVSKLELKEFLD 104          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_RICTY (Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.530e-16
Identity = 38/103 (36.89%), Postives = 69/103 (66.99%), Query Frame = 2
Query:  275 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYID 583
            +  +T+  F N VL+S+ PV+V+F A WCGPC+++ P ++ +++E  D++ V+K++ D NP+   EY V  +PT++LFKNG++  +  + G   K  L ++I+
Sbjct:    2 VNNVTDISFKNEVLESDLPVIVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGVRSIPTIMLFKNGEQ--KDTKIGLQQKKSLLDWIN 102          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.407e-16
Identity = 51/153 (33.33%), Postives = 81/153 (52.94%), Query Frame = 2
Query:  170 KNQLLFGSRTNLSLKSYNNSLPKLAIRVR-------CGASSGITEIT---ESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLDS 598
            K++LL G   NL L S     P    RV        C + + + E+    E  +   V+  E PVLVEF A WCGPCR++AP ++ LA++Y  ++T  K++ D +P +   Y +  +PT+++FK G++  +    GA+ K  L   ID  + S
Sbjct:   19 KDRLLVG---NLVLPSKRALAPLSVGRVATRRPRHVCQSKNAVDEVVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKDYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEK--KESVIGAVPKSTLTTLIDKYIGS 166          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: TRXM3_ARATH (Thioredoxin M-type 3, chloroplastic OS=Arabidopsis thaliana GN=At2g15570 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.812e-16
Identity = 45/137 (32.85%), Postives = 77/137 (56.20%), Query Frame = 2
Query:  179 LLFGSRTNLSLKSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTL 589
            L F  R +L     ++S  +L +   C   S   E+T+  + ++VLKSE PVLVEF  +WCGPCR+V   ++ +A +Y  +L    ++ D +  + EEY++  +P ++LFKNG+     +RE  +  +  + YI  +
Sbjct:   40 LRFSDRRSL----LSSSASRLRLSPLCVRDSRAAEVTQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPVAEEYEIKAVPVVLLFKNGE-----KRESIMGTMPKEFYISAI 167          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: TRXM1_ARATH (Thioredoxin M-type 1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.591e-16
Identity = 49/141 (34.75%), Postives = 82/141 (58.16%), Query Frame = 2
Query:  191 SRTNLSLKSYNNSLPKLAIRVRCGA---SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLDSIS 604
            +R +LS  S N+ + +L   V C A   ++GI  + +S + + VLK++ PV V+F A WCGPC+++ P V  LAQ+Y  +    K++ D +P    +Y V  +PT+++F NG++  +    GA++K       DTL  SI+
Sbjct:   45 TRVSLSSLSKNSRVSRLRRGVICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVNELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEK--KDTIIGAVSK-------DTLATSIN 176          
The following BLAST results are available for this feature:
BLAST of CX301596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
THIO_PORYE3.082e-1744.05Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]
THIO_CHRVI4.025e-1738.32Thioredoxin OS=Chromatium vinosum GN=trxA PE=1 SV=... [more]
THIO_RICPR5.257e-1740.96Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 ... [more]
THIO_STRCO6.866e-1743.90Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=... [more]
THIO_BUCAP1.171e-1641.75Thioredoxin OS=Buchnera aphidicola subsp. Schizaph... [more]
THIO_BUCAI1.171e-1637.86Thioredoxin OS=Buchnera aphidicola subsp. Acyrthos... [more]
THIO_RICTY1.530e-1636.89Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1[more]
TRXM_MAIZE3.407e-1633.33Thioredoxin M-type, chloroplastic OS=Zea mays GN=T... [more]
TRXM3_ARATH5.812e-1632.85Thioredoxin M-type 3, chloroplastic OS=Arabidopsis... [more]
TRXM1_ARATH7.591e-1634.75Thioredoxin M-type 1, chloroplastic OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC08011E03SK PhyRootSw1 Citrus sinensis cDNA clone C08011E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301596 ID=CX301596; Name=CX301596; organism=Citrus sinensis; type=EST; length=754bp
ATTCGGCACGAGGTAAAAATCTTTAATCACTTGCAAAATGGATATCGTCT
TCTCCAACTCCACTTTATTGTTCAGACAACAACCACTGGTTGCTCCTGTT
CGTACAGTTACTGGGACCCACAGGCAACAGAACATCATCACCAGCGCTAC
AACAACAACAACGTCGTCAAAGAATCAGCTATTGTTCGGGTCTCGAACGA
ACCTCTCACTAAAGTCTTATAATAATTCGCTTCCCAAGTTGGCAATACGC
GTACGCTGCGGTGCTAGCAGTGGCATAACGGAGATTACCGAAAGTGAGTT
CCCAAACACGGTCTTGAAATCTGAGCGTCCGGTTCTTGTCGAGTTCGTGG
CCAATTGGTGCGGTCCTTGCCGCTTGGTTGCTCCCGCCGTCGAATGGCTC
GCCCAGGAATACGGAGACAGATTGACTGTCGTAAAGATTGATCATGACGC
AAACCCACAACTAATAGAGGAATACAAAGTTTATGGATTGCCGACCTTGA
TTCTCTTCAAGAATGGACAGGAAGTTCCGGAAAGCAGGAGGGAAGGTGCA
ATTACTAAGTTGAAGCTTAAAGAGTATATTGATACTCTTTTAGATTCAAT
CTCAGTGGCTTAGCCCTCTTTTGAACATGCTCAGCAAATTATGCTCGTTC
TTCAACAGATTTTGACATCATTGGCAAAGACGAATATGGGTAAATATTTA
CTTTTTCCTTATGTAAATCTGTATCATTCGTTACAGTATCCGTGGATGTA
TTCA
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