CX301596

Overview
NameCX301596
Unique NameCX301596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 37/104 (35.58%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  281 EITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 592
            E+TE  F +T+ K     LV+F A WCGPC++++P ++ LA EY  +  + K++ D   +L  ++ +  +PTL+  K+G+ V   +  G  TK+ LKE ++ LL
Sbjct:    6 ELTEENFESTIKKGV--ALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVV--HQLVGVQTKVALKEQLNKLL 105          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 28/69 (40.58%), Postives = 47/69 (68.12%), Query Frame = 2
Query:  311 VLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNG 517
            +L  ++ V+++F A+WCGPC+++AP ++ LA EY DR+ V+K++ D N  +  EY V  +PT +  K G
Sbjct:   16 ILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGG 84          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 2
Query:  332 VLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPES 535
            VLV+F A WCGPC+++ P +E LA E    +T++K+D DA+P+  E++ V  +PTLILFK+G+EV  S
Sbjct:   19 VLVDFFAEWCGPCKMLTPVLEALAAEL-PYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERS 85          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO2_CHLTE (Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 33/101 (32.67%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  281 EITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYID 583
            E T+  F   +L S++  LV+F A WCGPC ++ P +E LA +Y  +  + K++ D NP    +Y +  +PT+++ K G+ V   +  GA+ K  + + +D
Sbjct:    7 EATDQNFQAEILNSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIIAKLNVDENPNTAGQYGIRSIPTMLIIKGGKVV--DQMVGALPKNMIAKKLD 105          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: ERP38_NEUCR (Protein disulfide-isomerase erp38 OS=Neurospora crassa GN=erp38 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.286e-12
Identity = 42/110 (38.18%), Postives = 58/110 (52.73%), Query Frame = 2
Query:  227 SLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQ--EYG-DRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREG 547
            SL   ++     A S + ++  S F + VLKS +P LVEF A WCG C+ +AP  E LA   EY  D++ + K+D DA   L + + V G PTL  F    E P   + G
Sbjct:    6 SLVVASLAAAVAAKSAVLDLIPSNFDDVVLKSGKPTLVEFFAPWCGHCKNLAPVYEELATALEYAKDKVQIAKVDADAERALGKRFGVQGFPTLKFFDGKSEQPVDYKGG 115          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  332 VLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLD 595
            VLV+F A WCGPCR++ P +E LA E    +T+ KI+ D N +  E Y+V  +PTLILFK+G EV        +  LK KE++  L++
Sbjct:   19 VLVDFFAEWCGPCRMLTPILENLAAEL-PHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEV------ARVVGLKDKEFLTNLIN 99          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO2_SHIFL (Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  254 RCGASSGITEITES--EFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 592
            RCG      E+  +  E  + +LK + PV+++F A WCGPCR  AP  E +AQE   ++  VK++ +A  +L   + +  +PT+++FKNGQ V      GA+ K     +++  L
Sbjct:   27 RCGHDLFDGEVINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVV--DMLNGAVPKAPFDSWLNESL 139          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO2_ECOLI (Thioredoxin-2 OS=Escherichia coli (strain K12) GN=trxC PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  254 RCGASSGITEITES--EFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 592
            RCG      E+  +  E  + +LK + PV+++F A WCGPCR  AP  E +AQE   ++  VK++ +A  +L   + +  +PT+++FKNGQ V      GA+ K     +++  L
Sbjct:   27 RCGHDLFDGEVINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVV--DMLNGAVPKAPFDSWLNESL 139          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO2_ECOL6 (Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  254 RCGASSGITEITES--EFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 592
            RCG      E+  +  E  + +LK + PV+++F A WCGPCR  AP  E +AQE   ++  VK++ +A  +L   + +  +PT+++FKNGQ V      GA+ K     +++  L
Sbjct:   27 RCGHDLFDGEVINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVV--DMLNGAVPKAPFDSWLNESL 139          
BLAST of CX301596 vs. ExPASy Swiss-Prot
Match: THIO2_ECO57 (Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  254 RCGASSGITEITES--EFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 592
            RCG      E+  +  E  + +LK + PV+++F A WCGPCR  AP  E +AQE   ++  VK++ +A  +L   + +  +PT+++FKNGQ V      GA+ K     +++  L
Sbjct:   27 RCGHDLFDGEVINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVV--DMLNGAVPKAPFDSWLNESL 139          
The following BLAST results are available for this feature:
BLAST of CX301596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
THIO_HELPJ1.026e-1235.58Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]
THIOT_DROME1.026e-1240.58Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
THIO_CHLMU1.750e-1250.00Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO2_CHLTE1.750e-1232.67Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 S... [more]
ERP38_NEUCR2.286e-1238.18Protein disulfide-isomerase erp38 OS=Neurospora cr... [more]
THIO_CHLPN3.899e-1244.32Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
THIO2_SHIFL3.899e-1233.91Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV... [more]
THIO2_ECOLI3.899e-1233.91Thioredoxin-2 OS=Escherichia coli (strain K12) GN=... [more]
THIO2_ECOL63.899e-1233.91Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 ... [more]
THIO2_ECO573.899e-1233.91Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08011E03SK PhyRootSw1 Citrus sinensis cDNA clone C08011E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301596 ID=CX301596; Name=CX301596; organism=Citrus sinensis; type=EST; length=754bp
ATTCGGCACGAGGTAAAAATCTTTAATCACTTGCAAAATGGATATCGTCT
TCTCCAACTCCACTTTATTGTTCAGACAACAACCACTGGTTGCTCCTGTT
CGTACAGTTACTGGGACCCACAGGCAACAGAACATCATCACCAGCGCTAC
AACAACAACAACGTCGTCAAAGAATCAGCTATTGTTCGGGTCTCGAACGA
ACCTCTCACTAAAGTCTTATAATAATTCGCTTCCCAAGTTGGCAATACGC
GTACGCTGCGGTGCTAGCAGTGGCATAACGGAGATTACCGAAAGTGAGTT
CCCAAACACGGTCTTGAAATCTGAGCGTCCGGTTCTTGTCGAGTTCGTGG
CCAATTGGTGCGGTCCTTGCCGCTTGGTTGCTCCCGCCGTCGAATGGCTC
GCCCAGGAATACGGAGACAGATTGACTGTCGTAAAGATTGATCATGACGC
AAACCCACAACTAATAGAGGAATACAAAGTTTATGGATTGCCGACCTTGA
TTCTCTTCAAGAATGGACAGGAAGTTCCGGAAAGCAGGAGGGAAGGTGCA
ATTACTAAGTTGAAGCTTAAAGAGTATATTGATACTCTTTTAGATTCAAT
CTCAGTGGCTTAGCCCTCTTTTGAACATGCTCAGCAAATTATGCTCGTTC
TTCAACAGATTTTGACATCATTGGCAAAGACGAATATGGGTAAATATTTA
CTTTTTCCTTATGTAAATCTGTATCATTCGTTACAGTATCCGTGGATGTA
TTCA
back to top