CX301595

Overview
NameCX301595
Unique NameCX301595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15_CHICK (60S ribosomal protein L15 (Fragment) OS=Gallus gallus GN=RPL15 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.758e-62
Identity = 113/165 (68.48%), Postives = 132/165 (80.00%), Query Frame = 3
Query:  159 KPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNTIGGSHRAAWKRRNTKVFLRYR 653
            +PTRPDKA +LGYKAKQGYV+YR+ VRRGGRKRP  KG  YGKP + G+NQLKF R+L+SVAEERAGR    LRVLNSYW+ +D+TYK+FEVIL+DP H  IR +P   WI  PVHKHRE RGLTSAG+K RGL  KGH+ ++TIGGS RAAW+RRNT    RYR
Sbjct:    2 RPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKRIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLG-KGHKFHHTIGGSRRAAWRRRNTLQLHRYR 165          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15_PIG (60S ribosomal protein L15 (Fragment) OS=Sus scrofa GN=RPL15 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.027e-56
Identity = 106/154 (68.83%), Postives = 122/154 (79.22%), Query Frame = 3
Query:  192 GYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNTIGGSHRAAWKRRNTKVFLRYR 653
            GYKAKQGYV+YRI VRRGGRKRP  KG  YGKP + G+NQLKF R+L+SV EERAGR    LRVLNSYW+ +D+TYK+FEVIL+DP H AIR +P   WI  PVHKHRE RGLTSAG+K RGL  KGH+ ++TIGGS RAAW+RRNT    RYR
Sbjct:    1 GYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVXEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLG-KGHKFHHTIGGSRRAAWRRRNTLQLHRYR 153          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15_QUESU (60S ribosomal protein L15 OS=Quercus suber GN=RPL15 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.755e-48
Identity = 105/205 (51.22%), Postives = 127/205 (61.95%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNTIGGSHRAAWKRRNTKVFLRYR 653
            MGAYKY+ E+ R+KQSDVLRFLLRVR W+YRQ N I R ++P+RPDKA +LGYKAKQGYV+YR+ VRRG RKRP  KG  +GKP NQGINQLKF R+LRS AEER  R    LR+LNSYWI +  +    +  L  P+       P       P             GK++RGL   G  + +T   +H A WKR N     RYR
Sbjct:    1 MGAYKYVAEMERRKQSDVLRFLLRVRCWEYRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRVRVRRGNRKRPAPKGATFGKPVNQGINQLKFQRSLRSTAEERVARRCGGLRILNSYWITKTVSTSTLKSSLSTPSTRLSVVMPVSTGSATPYTSAENLAVSHPLGKQNRGL---GRGSKHTKSPNH-AFWKRTNKLFLRRYR 201          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_THEGJ (50S ribosomal protein L15e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.065e-45
Identity = 92/181 (50.83%), Postives = 121/181 (66.85%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRA 581
            MG YKY+ E W+  +   +  LL+ R  ++R+   + R+ +PTR D+A  LGY+AKQGYVV R+ VRRGGRKRP  KG    KP   G+ +    ++L+ +AEE+A R   NL VLNSYW+ +D  YK+FEVI+VDP+H  I++DP+I WI    HK R  RGLTSAGKK RGLR KG  A
Sbjct:    1 MGMYKYIREAWKSPKKSYVGELLKKRMIKWRREPVVVRIERPTRLDRARSLGYQAKQGYVVVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWITGKAHKGRVFRGLTSAGKKGRGLRNKGKGA 179          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_THEON (50S ribosomal protein L15e OS=Thermococcus onnurineus (strain NA1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.817e-45
Identity = 91/181 (50.28%), Postives = 121/181 (66.85%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRA 581
            MG YKY+ E W+  +   +  LL+ R  ++R+   + RV +PTR D+A  LGY+AKQGYV+ R+ VRRGGRKRP  KG    KP   G+ +    ++L+ +AEE+A R   NL VLNSYW+ +D  YK+FEVI+VDP+H  I++DP+I WI    HK R  RGLTSAG+K RGLR KG  A
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKKRMIKWRREPVVVRVERPTRLDRARSLGYQAKQGYVIVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIAGKAHKGRVFRGLTSAGRKSRGLRNKGKGA 179          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_PYRKO (50S ribosomal protein L15e OS=Pyrococcus kodakaraensis GN=rpl15e PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.817e-45
Identity = 91/181 (50.28%), Postives = 121/181 (66.85%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRA 581
            MG YKY+ E W+  +   +  LL+ R  Q+R+   ++R+ +PTR D+A  LGY+AKQGYVV R+ VRRGGRKRP  KG    KP   G+ +    ++L+ +AEE+A R   NL VLNSYW+ +D  YK+FEVI+VDP+H  I++DP+I WI    HK R  RGLTSAGK+ RGL  KG  A
Sbjct:    1 MGMYKYIREAWKSPKKSYVGELLKKRMIQWRRDPVVKRIERPTRLDRARSLGYQAKQGYVVVRVRVRRGGRKRPRWKG--GRKPSKMGMVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIAGKAHKGRVFRGLTSAGKRSRGLLNKGKGA 179          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_PYRHO (50S ribosomal protein L15e OS=Pyrococcus horikoshii GN=rpl15e PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.008e-44
Identity = 90/181 (49.72%), Postives = 120/181 (66.30%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRA 581
            MG YKY+ E W+  +   +  LL+ R  ++R+   + R+ +PTR D+A  LGY+AKQGY++ R+ VRRGGRKRP  KG    KP   G  +    ++L+ +AEE+A R   NL VLNSYW+ +D  YK+FEVI+VDP+H  I++DP+I WI    HK R  RGLTSAGKK RGLR KG  A
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKQRMIKWRREPSVVRIERPTRLDRARALGYQAKQGYIIVRVRVRRGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKGA 179          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_PYRAB (50S ribosomal protein L15e OS=Pyrococcus abyssi GN=rpl15e PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.008e-44
Identity = 91/181 (50.28%), Postives = 120/181 (66.30%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRA 581
            MG YKY+ E W+  +   +  LL+ R  ++R+   + R+ +PTR D+A  LGY+AKQGYV+ R+ VRRGGRKRP  KG    KP   G  +    ++L+ +AEE+A R   NL VLNSYW+ +D  YK+FEVI+VDP+H  I++DP+I WI    HK R  RGLTSAGKK RGLR KG  A
Sbjct:    1 MGMYKYIREAWKSPKKSYVGQLLKQRMIKWRREPAVVRIERPTRLDRARALGYQAKQGYVIVRVRVRRGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKGA 179          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_AERPE (50S ribosomal protein L15e OS=Aeropyrum pernix GN=rpl15e PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.008e-44
Identity = 94/206 (45.63%), Postives = 130/206 (63.11%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPN-HKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNTIGGSHRAAWKRRNTKVFLRYR 653
            +  Y Y+   W+K    +   L++ R  ++R+   I RV KPTR D+A  LGYKAKQG +V R+ VR+GGR++P  +KG    +PK  G+      ++LR +AEERA R   NL VLNSY++ +D  YK++EVILVDPNH AI+NDP +NW+    HK R  RGLTSAGKK RGL     R +  + G+H+  WK++  +  LR R
Sbjct:    3 LSMYHYIAREWKKPYEGLHGELMKARLLEWRRQPSILRVEKPTRLDRARALGYKAKQGVIVARVRVRKGGRRKPRPNKG---RRPKRMGVYGFAPAKSLRLIAEERAQRKYPNLVVLNSYYVGEDGRYKWYEVILVDPNHPAIKNDPELNWVTTGKHKGRPFRGLTSAGKKMRGL-----RKSRGLKGTHKYKWKKKAKERILRKR 200          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_PYRFU (50S ribosomal protein L15e OS=Pyrococcus furiosus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.844e-44
Identity = 90/181 (49.72%), Postives = 120/181 (66.30%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRA 581
            MG YKY+ E W+  +   +  LL+ R  ++R+   + R+ +PTR D+A  LGY+AKQGYV+ R+ VR+GGRKRP  KG    KP   G  +    ++L+ +AEE+A R   NL VLNSYW+ +D  YK+FEVI+VDP+H  I++DP+I WI    HK R  RGLTSAGKK RGLR KG  A
Sbjct:    1 MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRVRKGGRKRPRWKG--GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKGA 179          
The following BLAST results are available for this feature:
BLAST of CX301595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_CHICK4.758e-6268.4860S ribosomal protein L15 (Fragment) OS=Gallus gal... [more]
RL15_PIG1.027e-5668.8360S ribosomal protein L15 (Fragment) OS=Sus scrofa... [more]
RL15_QUESU1.755e-4851.2260S ribosomal protein L15 OS=Quercus suber GN=RPL1... [more]
RL15E_THEGJ1.065e-4550.8350S ribosomal protein L15e OS=Thermococcus gammato... [more]
RL15E_THEON1.817e-4550.2850S ribosomal protein L15e OS=Thermococcus onnurin... [more]
RL15E_PYRKO1.817e-4550.2850S ribosomal protein L15e OS=Pyrococcus kodakarae... [more]
RL15E_PYRHO2.008e-4449.7250S ribosomal protein L15e OS=Pyrococcus horikoshi... [more]
RL15E_PYRAB2.008e-4450.2850S ribosomal protein L15e OS=Pyrococcus abyssi GN... [more]
RL15E_AERPE2.008e-4445.6350S ribosomal protein L15e OS=Aeropyrum pernix GN=... [more]
RL15E_PYRFU5.844e-4449.7250S ribosomal protein L15e OS=Pyrococcus furiosus ... [more]

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Properties
Property NameValue
Genbank descriptionC08011E01SK PhyRootSw1 Citrus sinensis cDNA clone C08011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301595 ID=CX301595; Name=CX301595; organism=Citrus sinensis; type=EST; length=706bp
AATTCGGCACGAGGTTAATATCGATTAATTAAACAAAAATGGGAGCATAC
AAGTACCTCGAAGAGCTCTGGAGAAAGAAGCAATCTGATGTGCTTCGTTT
CTTGTTACGTGTTCGTGCTTGGCAATATCGTCAAACCAACAAGATCCAAC
GTGTCAACAAGCCAACTCGCCCAGACAAGGCTCACAAGTTAGGATACAAG
GCCAAGCAAGGATATGTTGTCTACCGTATCGCTGTCCGTCGTGGTGGCCG
CAAGAGACCAAACCACAAGGGTATTGTCTACGGTAAACCAAAGAACCAAG
GTATCAACCAGTTAAAGTTCGTCCGCAACTTACGCAGTGTTGCCGAGGAA
CGTGCTGGTCGTGTTGCTGCCAACTTACGTGTGTTGAACTCTTACTGGAT
CAACCAAGATGCCACCTACAAGTACTTCGAGGTCATCTTAGTCGATCCTA
ACCACGTTGCCATCAGAAACGATCCTCGCATCAACTGGATCGTTAACCCT
GTTCACAAGCACCGCGAACGCCGTGGACTTACCTCCGCTGGCAAGAAGCA
CCGCGGTCTCAGAGTCAAGGGTCACAGAGCCAACAACACCATCGGTGGTT
CCCACAGAGCTGCCTGGAAGCGCCGCAACACCAAGGTCTTCCTCAGATAC
CGTTAATCAACTTCTTCACCTCCTCCATAATGCACTTAGCGTTGTTATTC
CTCGCT
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