CX301595

Overview
NameCX301595
Unique NameCX301595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_METJA (50S ribosomal protein L15e OS=Methanocaldococcus jannaschii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.968e-44
Identity = 85/178 (47.75%), Postives = 119/178 (66.85%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKG 572
            MG YKY+ E W++ +   +R LL  R  Q+R+   + R+ +PTR D+A  LGYK KQG +V R+ VRRGG ++P  K     KP   G+N++   ++++ +AEERA R   N+ VLNSYW+ +D  +K++EVILVDP H AI+ DP++NW+    H+ R  RGLTSAGKK RGLR KG
Sbjct:    1 MGIYKYIREAWKRPKESYVRQLLWERLQQWRREPAVVRIERPTRLDRARALGYKPKQGIIVVRVRVRRGGLRKPRPKNSK--KPATLGVNKITMGKSIQRIAEERAARKYPNMEVLNSYWVGEDGKHKWYEVILVDPYHPAIKADPQLNWLCTGKHRGRAFRGLTSAGKKGRGLRNKG 176          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_STAMF (50S ribosomal protein L15e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.143e-42
Identity = 96/206 (46.60%), Postives = 129/206 (62.62%), Query Frame = 3
Query:   42 GAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGG--RKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNTIGGSHRAAWKRRNTKVFLRYR 653
            G Y Y+ +LW++     +  L+R R  ++R+   I R+ KPTR D+A  LGYKAKQG+++ R+ VR+GG  ++RPN KG    +PK  GI      ++LR +AEERA R   NL VLNSY++ +D  YK++EVILVDP+H AI NDP I WI    H+ R  RGLTSAGKK RGLR K      TI    +  WKR+  +  L+ R
Sbjct:    4 GMYHYIAQLWKRPYEGDMLTLMRQRLIKWRREPAIIRIEKPTRLDRARALGYKAKQGFIIVRVRVRKGGLRKQRPN-KG---RRPKRMGIYGFAPSKSLRLIAEERAARKYPNLEVLNSYYVGEDGNYKWYEVILVDPHHPAICNDPDIKWICEKQHRRRVFRGLTSAGKKMRGLR-KSRGLKYTI----KYKWKRKQKERLLKKR 200          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_HALLT (50S ribosomal protein L15e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.545e-41
Identity = 85/181 (46.96%), Postives = 116/181 (64.09%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNT 590
            Y +++E WR  +   L  L   R  ++R    I+R+ +PTR DKA +LGYKAKQG VV R++VR+GG ++  HK     + K QG+N+L   ++++ ++EERA R   NLRVLNSYW+ +D + K+ EVILVDPNH AI ND  + WI +  HK R  RGLTSAG K RG R +G     T
Sbjct:    6 YSHIKEAWRSPKEGKLAELQWQRKQEWRDEGAIERIERPTRLDKARELGYKAKQGVVVARVSVRKGGSRKQRHKA--GRRSKRQGVNRLSRRKSIQRISEERASRKYRNLRVLNSYWVGEDGSQKWHEVILVDPNHPAIENDGDLGWIASDDHKGRAFRGLTSAGTKGRGQRTRGTGTEKT 184          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_METST (50S ribosomal protein L15e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.298e-40
Identity = 86/179 (48.04%), Postives = 118/179 (65.92%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGK-PKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRA 581
            YKY++E W+      ++ L+R R  ++R+   I R++KPTR D+A +LGYKAK GYVV RI VRRG R++   K    G+ PK  G+N++   ++++ +AEER  R   NL VLNSYW+ +D   KY+EVILVDP   +I++D +INWI +  H  R  RGLTSAGKK RGL  KG  A
Sbjct:    7 YKYMKEAWKNPDESYVKELMRERLPKWRRQPVIIRIDKPTRIDRARRLGYKAKTGYVVARIRVRRGSRRKSRFKN---GRDPKRMGVNKISGEKSIQRMAEERVARKYPNLEVLNSYWVWEDGKAKYYEVILVDPQCPSIQHDNKINWICSKKHTRRAFRGLTSAGKKGRGLNKKGKGA 182          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_METM5 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.119e-40
Identity = 82/181 (45.30%), Postives = 113/181 (62.43%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRA 581
            M  Y Y++E W+   +  ++ L   R   +R+   + R+ +PTR D+A  LGYKAKQG VV R++VRRGG ++P  K     KP   GIN++   ++++ +AEERA +   N+ VLNSYW+ QD   K++EVILVDP   +I+ND   NW+    HK R  RGLTSAGKK RGL  KG  A
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWARMQDWRKEPSVIRIERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPATMGINKITMAKSIQRIAEERAAKKYPNMEVLNSYWVGQDGKQKWYEVILVDPCQPSIKNDKSYNWLCKGTHKGRVTRGLTSAGKKGRGLMYKGKGA 179          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_METTH (50S ribosomal protein L15e OS=Methanobacterium thermoautotrophicum GN=rpl15e PE=3 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 6.686e-40
Identity = 78/178 (43.82%), Postives = 118/178 (66.29%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRA 581
            Y+Y+++ W+  +   +R L+  RA ++R+   I+R+ +PTR D+A  LGY+AK GY+V R  VRRG +++   K     +P   G+ ++   ++++ +AEER  R   N+ VLNSYW+ +D  YK++EVILVDPNH+AI+NDP+I WI    H+ R  RGL S GKK+RGLR +G  A
Sbjct:    3 YRYVKDAWKNPKDSYVRELMWERAPKWRRDPVIKRIERPTRIDRARALGYRAKPGYIVVRTRVRRGSQRKTRFKA--GRRPTRMGVKKITTAKSIKRIAEERVARKYPNMEVLNSYWVWEDGKYKFYEVILVDPNHLAIKNDPKIYWICVKQHRGRVFRGLISEGKKNRGLRNRGKGA 178          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_METMP (50S ribosomal protein L15e OS=Methanococcus maripaludis GN=rpl15e PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.686e-40
Identity = 82/187 (43.85%), Postives = 115/187 (61.50%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNTIGG 599
            M  Y Y++E W+   +  ++ L   R   +R+   + R+ +PTR D+A  LGYKAKQG VV R++VRRGG ++P  K     KP   GIN++   ++++ +AEERA +   N+ VLNSYW+ QD   K++E+ILVDP H +I+ND   +W+    HK R  RGLTSAGKK RGL  KG  A     G
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWARMQDWRKEPSVLRIERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPATLGINKITMAKSIQRIAEERAAKRYPNMEVLNSYWVGQDGKQKWYEIILVDPCHPSIKNDKSYSWLSTGNHKGRANRGLTSAGKKGRGLMYKGKGAEKARPG 185          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_METM6 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.489e-39
Identity = 83/181 (45.86%), Postives = 113/181 (62.43%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRA 581
            M  Y Y++E W+   +  ++ L   R   +R+   + RV +PTR D+A  LGYKAKQG VV R++VRRGG ++P  K     KP   GIN++   ++++ +AEERA +   NL VLNSYW+ QD   K++EVILVD  H +I++D   NW+    HK R  RGLTSAGKK RGL  KG  A
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWSRMQDWRKEPSVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGLMYKGKGA 179          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_METM7 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.945e-39
Identity = 82/178 (46.07%), Postives = 112/178 (62.92%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKG 572
            M  Y Y++E W+   +  ++ L   R   +R+   + RV +PTR D+A  LGYKAKQG VV R++VRRGG ++P  K     KP   GIN++   ++++ +AEERA +   NL VLNSYW+ QD   K++EVILVD  H +I++D   NW+    HK R  RGLTSAGKK RGL  KG
Sbjct:    1 MSMYNYVKEAWKVPANSYVKELQWSRMQDWRKEPSVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGLMYKG 176          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_DESK1 (50S ribosomal protein L15e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.541e-39
Identity = 85/193 (44.04%), Postives = 122/193 (63.21%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNTIGGSHRAAWKRR 626
            Y Y+ E W++K  + L  L+R R  ++R+   + R+ KPTR DKA  LGYKAK G+++ R+ VR+GG+++P        +PK  G+      ++LR +AEERA R    L VLNSY++ +D  YK++EVILVDP+H +I NDP +NWI  P ++ R  RGLTSAGKK RGL     R +  + G+    WKR+
Sbjct:    6 YHYIAEAWKEKSRE-LEALIRQRLIEWRREPSVVRLEKPTRLDKARALGYKAKVGFIIVRVRVRKGGQRKPRPDS--GRRPKRMGVYGYAPAKSLRLIAEERAARKFPGLEVLNSYYVAEDGRYKWYEVILVDPHHPSICNDPDVNWICEPQNRGRVFRGLTSAGKKMRGL-----RKSRGLRGTVYYKWKRK 190          
The following BLAST results are available for this feature:
BLAST of CX301595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_METJA9.968e-4447.7550S ribosomal protein L15e OS=Methanocaldococcus j... [more]
RL15E_STAMF7.143e-4246.6050S ribosomal protein L15e OS=Staphylothermus mari... [more]
RL15E_HALLT3.545e-4146.9650S ribosomal protein L15e OS=Halorubrum lacusprof... [more]
RL15E_METST2.298e-4048.0450S ribosomal protein L15e OS=Methanosphaera stadt... [more]
RL15E_METM55.119e-4045.3050S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METTH6.686e-4043.8250S ribosomal protein L15e OS=Methanobacterium the... [more]
RL15E_METMP6.686e-4043.8550S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METM61.489e-3945.8650S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METM71.945e-3946.0750S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_DESK12.541e-3944.0450S ribosomal protein L15e OS=Desulfurococcus kamc... [more]

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Properties
Property NameValue
Genbank descriptionC08011E01SK PhyRootSw1 Citrus sinensis cDNA clone C08011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301595 ID=CX301595; Name=CX301595; organism=Citrus sinensis; type=EST; length=706bp
AATTCGGCACGAGGTTAATATCGATTAATTAAACAAAAATGGGAGCATAC
AAGTACCTCGAAGAGCTCTGGAGAAAGAAGCAATCTGATGTGCTTCGTTT
CTTGTTACGTGTTCGTGCTTGGCAATATCGTCAAACCAACAAGATCCAAC
GTGTCAACAAGCCAACTCGCCCAGACAAGGCTCACAAGTTAGGATACAAG
GCCAAGCAAGGATATGTTGTCTACCGTATCGCTGTCCGTCGTGGTGGCCG
CAAGAGACCAAACCACAAGGGTATTGTCTACGGTAAACCAAAGAACCAAG
GTATCAACCAGTTAAAGTTCGTCCGCAACTTACGCAGTGTTGCCGAGGAA
CGTGCTGGTCGTGTTGCTGCCAACTTACGTGTGTTGAACTCTTACTGGAT
CAACCAAGATGCCACCTACAAGTACTTCGAGGTCATCTTAGTCGATCCTA
ACCACGTTGCCATCAGAAACGATCCTCGCATCAACTGGATCGTTAACCCT
GTTCACAAGCACCGCGAACGCCGTGGACTTACCTCCGCTGGCAAGAAGCA
CCGCGGTCTCAGAGTCAAGGGTCACAGAGCCAACAACACCATCGGTGGTT
CCCACAGAGCTGCCTGGAAGCGCCGCAACACCAAGGTCTTCCTCAGATAC
CGTTAATCAACTTCTTCACCTCCTCCATAATGCACTTAGCGTTGTTATTC
CTCGCT
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