CX301595

Overview
NameCX301595
Unique NameCX301595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_SULTO (50S ribosomal protein L15e OS=Sulfolobus tokodaii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.392e-39
Identity = 82/196 (41.84%), Postives = 121/196 (61.73%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNTIGGSHRAAWKRRNTK 635
            Y Y+E+ W   QSD  + +LR R  ++R++  ++R++KPTR ++A  +GYKAKQG+VV R+ VRRGG  +P        +PK  G+      +  R +AEE+A R   NL VL SY++ +D  YKY+E+I+VDPNH  I++DP + W+ +P ++ R  RGLTSAGKK RGL +K      T+    +   K R  K
Sbjct:    6 YNYIEQTW---QSDEWKKVLRQRLIEWRKSPAVERIDKPTRLNRARAIGYKAKQGFVVVRVRVRRGGLNKPRPNS--GRRPKRMGVYGYSPAKGYRWIAEEKAARKFPNLEVLGSYYVGEDGMYKYYEIIMVDPNHPVIKSDPNLKWLQDPANRKRVFRGLTSAGKKARGL-LKSRGLKGTVKHKWKKKEKEREQK 195          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_HALSA (50S ribosomal protein L15e OS=Halobacterium salinarium GN=rpl15e PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.654e-39
Identity = 80/175 (45.71%), Postives = 114/175 (65.14%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKG 572
            Y +++E W       L  L   R   +R+   I+RV++PTR DKA +LGYKAKQG VV R++VR+G  ++   K     + K QG+N++   +NL+ +AEERA R   NLR LNSYW+ +D + K+FE IL+DP H AI+ND  +NWI +  HK+R  RG TSAG++ RGL+ +G
Sbjct:    6 YSHIKEAWEDPDDGKLAELQWQRKQDWRKEGAIERVDRPTRLDKARELGYKAKQGVVVVRVSVRKGTARKSRFKA--GRRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGLQNRG 178          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_HALS3 (50S ribosomal protein L15e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.654e-39
Identity = 80/175 (45.71%), Postives = 114/175 (65.14%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKG 572
            Y +++E W       L  L   R   +R+   I+RV++PTR DKA +LGYKAKQG VV R++VR+G  ++   K     + K QG+N++   +NL+ +AEERA R   NLR LNSYW+ +D + K+FE IL+DP H AI+ND  +NWI +  HK+R  RG TSAG++ RGL+ +G
Sbjct:    6 YSHIKEAWEDPDDGKLAELQWQRKQDWRKEGAIERVDRPTRLDKARELGYKAKQGVVVVRVSVRKGTARKSRFKA--GRRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGLQNRG 178          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_METMJ (50S ribosomal protein L15e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.669e-38
Identity = 79/182 (43.41%), Postives = 113/182 (62.09%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNH-KGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNT 590
            Y Y+ E W++     ++ LL  R   +R+   I RV  PTR D+A  LGYKAKQG VV R+ +RRGGR++P + +G    +    G+ +L   ++L+ +AEERA R   N+  LNSYW+ +D   K+FEVILVD +H +I++D  + W+ NPVH+ R  RG TSAG K RG+R +G     T
Sbjct:    6 YAYVREAWKRPDRSEVKALLWERLQTWRREGSIVRVEHPTRIDRARSLGYKAKQGIVVVRVKIRRGGRRKPRYTRG---RRSARMGMRRLTPAKSLQRMAEERASRKFPNMEALNSYWVGEDGRSKWFEVILVDGHHPSIKSDRNLAWLANPVHRGRAERGKTSAGMKGRGMRTRGRGTEKT 184          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_METKA (50S ribosomal protein L15e OS=Methanopyrus kandleri GN=rpl15e PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.669e-38
Identity = 81/178 (45.51%), Postives = 113/178 (63.48%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRA 581
            YKY  E W++ +   +  LL+ R  ++R+   +QR+ +PTR ++A +LGY+AK GYVV R+ V +GGR++   K     +PK  G N+    ++ + +AEERA R   NL VLNSYW+ +D  YKY+EVI+VDP H  I++D RINWI     K R  RG T AGKK RGLR +G  A
Sbjct:    7 YKYQREAWKRPKDSYVGELLKERLPKWRKGPSVQRIKRPTRIERARRLGYRAKPGYVVVRVRVPKGGRRKSRPKK--GRRPKRMGKNKFSPGKSKQWIAEERAQRKYPNLEVLNSYWVGEDGQYKYYEVIMVDPYHPQIKSDHRINWICQKSQKGRVFRGKTGAGKKARGLRKRGKGA 182          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_HALWD (50S ribosomal protein L15e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.258e-38
Identity = 79/182 (43.41%), Postives = 117/182 (64.29%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGK-PKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNT 590
            Y +++E W++     L  L   R  ++R    I R+++PTR DKA +LGYKAKQG ++ R+AVR+GG ++   K    G+  K QG+N+L    +++ +AEERA R   NLR L SYW+ +D + K+ E+IL+DP H AI ND  +NWI +  HK R  RGLT+AG+ +RGL+ +G  A +T
Sbjct:    6 YSHIKEAWKQPGDGKLAELQWQRKQEWRDQGAIVRIDRPTRLDKARELGYKAKQGVIIARVAVRKGGARK---KRFTSGRRSKRQGVNRLGRRTSIQRIAEERAARKYPNLRTLASYWVGEDGSQKWHEIILIDPEHAAIENDDDLNWICDDTHKGRAFRGLTNAGRSNRGLQNRGKGAEHT 184          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_NATPD (50S ribosomal protein L15e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.106e-37
Identity = 78/181 (43.09%), Postives = 115/181 (63.54%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNT 590
            Y ++ E W+  +   L  L   R  ++R    I+R+ +PTR DKA  LGYKAKQG VV R++VR+G  ++   K     + K QG+N++   +NL+ +AEER+GR   NLRVLNSYW+ +D + K+FEVIL+DP H AI+ND  ++WI +   + R  RG TSAG++ RG + +G    +T
Sbjct:    6 YSHIREAWKTPKEGKLAELQWQRQQEWRDQGAIERIERPTRLDKARSLGYKAKQGVVVARVSVRKGTARKQRFKA--GRRSKRQGVNKITRRKNLQRIAEERSGRKFRNLRVLNSYWVGEDGSQKWFEVILLDPEHGAIQNDDDLSWICDDSQRGRAYRGRTSAGQRGRGQQKRGKGTEHT 184          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_SULSO (50S ribosomal protein L15e OS=Sulfolobus solfataricus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.298e-37
Identity = 81/197 (41.12%), Postives = 122/197 (61.93%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPN-HKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNTIGGSHRAAWKRR 626
            +  Y Y+E  W  ++    + +LR R  ++R+   I R+ KPTR ++A  LGYKAKQG+V+ R+ VRRGG  +P  +KG    +PK  G+      +  R +AEERA R   NL VL SY++ +D  YKY+E+++VDP+H  I++DP+  W+ +P +++R  RGLTSAGKK RGL     R +  + G+ R  W R+
Sbjct:    3 LSMYHYIENTWNSEEWK--KSVLRQRLIKWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNKG---RRPKRMGVYGYSPAKGYRWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIVMVDPSHPVIKSDPKHKWLQDPSNRNRVFRGLTSAGKKVRGL-----RKSRGLKGTVRYKWNRK 189          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_METHJ (50S ribosomal protein L15e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.919e-37
Identity = 79/176 (44.89%), Postives = 111/176 (63.07%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGK-PKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKG 572
            Y Y+ + W+      ++ LL  R   +R+   I RV +PTR D+A  LGYKAKQG VV R+ VRRGGR+   +   V G+     G+N+    ++++ +AEERA R   N+ VLNSYW+ +D   K++EVIL+DP+H +I ND  +NWI  P H+ R  RGLTSAG K RG+R +G
Sbjct:    6 YAYVRDAWKIPDDTGVKALLWERMQDWRREGSIVRVRRPTRIDRARALGYKAKQGIVVVRVKVRRGGRRASRY---VRGRRTARMGVNRKTMGKSIQRIAEERACRKYPNMEVLNSYWVGEDGRQKWYEVILLDPHHPSIINDKTLNWISKPGHRGRSERGLTSAGVKGRGMRRRG 178          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_SULIY (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.036e-37
Identity = 83/198 (41.92%), Postives = 122/198 (61.62%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPN-HKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLR-VKGHRANNTIGGSHRAAWKRR 626
            +  Y Y+E  W  ++    + +LR R  ++R+   I R+ KPTR ++A  LGYKAKQG+V+ R+ VRRGG  +P  +KG    +PK  G+      +  + +AEERA R   NL VL SY++ +D  YKY+E+I+VDP+H  I+NDP   W+ +P +++R  RGLTSAGKK RGLR  KG +      G+ +  W R+
Sbjct:    3 LSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNKG---RRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFK------GTVKHKWSRK 189          
The following BLAST results are available for this feature:
BLAST of CX301595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_SULTO7.392e-3941.8450S ribosomal protein L15e OS=Sulfolobus tokodaii ... [more]
RL15E_HALSA9.654e-3945.7150S ribosomal protein L15e OS=Halobacterium salina... [more]
RL15E_HALS39.654e-3945.7150S ribosomal protein L15e OS=Halobacterium salina... [more]
RL15E_METMJ3.669e-3843.4150S ribosomal protein L15e OS=Methanoculleus maris... [more]
RL15E_METKA3.669e-3845.5150S ribosomal protein L15e OS=Methanopyrus kandler... [more]
RL15E_HALWD6.258e-3843.4150S ribosomal protein L15e OS=Haloquadratum walsby... [more]
RL15E_NATPD3.106e-3743.0950S ribosomal protein L15e OS=Natronomonas pharaon... [more]
RL15E_SULSO5.298e-3741.1250S ribosomal protein L15e OS=Sulfolobus solfatari... [more]
RL15E_METHJ6.919e-3744.8950S ribosomal protein L15e OS=Methanospirillum hun... [more]
RL15E_SULIY9.036e-3741.9250S ribosomal protein L15e OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionC08011E01SK PhyRootSw1 Citrus sinensis cDNA clone C08011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301595 ID=CX301595; Name=CX301595; organism=Citrus sinensis; type=EST; length=706bp
AATTCGGCACGAGGTTAATATCGATTAATTAAACAAAAATGGGAGCATAC
AAGTACCTCGAAGAGCTCTGGAGAAAGAAGCAATCTGATGTGCTTCGTTT
CTTGTTACGTGTTCGTGCTTGGCAATATCGTCAAACCAACAAGATCCAAC
GTGTCAACAAGCCAACTCGCCCAGACAAGGCTCACAAGTTAGGATACAAG
GCCAAGCAAGGATATGTTGTCTACCGTATCGCTGTCCGTCGTGGTGGCCG
CAAGAGACCAAACCACAAGGGTATTGTCTACGGTAAACCAAAGAACCAAG
GTATCAACCAGTTAAAGTTCGTCCGCAACTTACGCAGTGTTGCCGAGGAA
CGTGCTGGTCGTGTTGCTGCCAACTTACGTGTGTTGAACTCTTACTGGAT
CAACCAAGATGCCACCTACAAGTACTTCGAGGTCATCTTAGTCGATCCTA
ACCACGTTGCCATCAGAAACGATCCTCGCATCAACTGGATCGTTAACCCT
GTTCACAAGCACCGCGAACGCCGTGGACTTACCTCCGCTGGCAAGAAGCA
CCGCGGTCTCAGAGTCAAGGGTCACAGAGCCAACAACACCATCGGTGGTT
CCCACAGAGCTGCCTGGAAGCGCCGCAACACCAAGGTCTTCCTCAGATAC
CGTTAATCAACTTCTTCACCTCCTCCATAATGCACTTAGCGTTGTTATTC
CTCGCT
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