CX301595

Overview
NameCX301595
Unique NameCX301595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_SULIN (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.036e-37
Identity = 83/198 (41.92%), Postives = 122/198 (61.62%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPN-HKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLR-VKGHRANNTIGGSHRAAWKRR 626
            +  Y Y+E  W  ++    + +LR R  ++R+   I R+ KPTR ++A  LGYKAKQG+V+ R+ VRRGG  +P  +KG    +PK  G+      +  + +AEERA R   NL VL SY++ +D  YKY+E+I+VDP+H  I+NDP   W+ +P +++R  RGLTSAGKK RGLR  KG +      G+ +  W R+
Sbjct:    3 LSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNKG---RRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFK------GTVKHKWSRK 189          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_SULIM (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.036e-37
Identity = 83/198 (41.92%), Postives = 122/198 (61.62%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPN-HKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLR-VKGHRANNTIGGSHRAAWKRR 626
            +  Y Y+E  W  ++    + +LR R  ++R+   I R+ KPTR ++A  LGYKAKQG+V+ R+ VRRGG  +P  +KG    +PK  G+      +  + +AEERA R   NL VL SY++ +D  YKY+E+I+VDP+H  I+NDP   W+ +P +++R  RGLTSAGKK RGLR  KG +      G+ +  W R+
Sbjct:    3 LSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNKG---RRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFK------GTVKHKWSRK 189          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_SULIL (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.036e-37
Identity = 83/198 (41.92%), Postives = 122/198 (61.62%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPN-HKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLR-VKGHRANNTIGGSHRAAWKRR 626
            +  Y Y+E  W  ++    + +LR R  ++R+   I R+ KPTR ++A  LGYKAKQG+V+ R+ VRRGG  +P  +KG    +PK  G+      +  + +AEERA R   NL VL SY++ +D  YKY+E+I+VDP+H  I+NDP   W+ +P +++R  RGLTSAGKK RGLR  KG +      G+ +  W R+
Sbjct:    3 LSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNKG---RRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFK------GTVKHKWSRK 189          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_SULIK (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.036e-37
Identity = 83/198 (41.92%), Postives = 122/198 (61.62%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPN-HKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLR-VKGHRANNTIGGSHRAAWKRR 626
            +  Y Y+E  W  ++    + +LR R  ++R+   I R+ KPTR ++A  LGYKAKQG+V+ R+ VRRGG  +P  +KG    +PK  G+      +  + +AEERA R   NL VL SY++ +D  YKY+E+I+VDP+H  I+NDP   W+ +P +++R  RGLTSAGKK RGLR  KG +      G+ +  W R+
Sbjct:    3 LSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNKG---RRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFK------GTVKHKWSRK 189          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_SULIA (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.036e-37
Identity = 83/198 (41.92%), Postives = 122/198 (61.62%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPN-HKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLR-VKGHRANNTIGGSHRAAWKRR 626
            +  Y Y+E  W  ++    + +LR R  ++R+   I R+ KPTR ++A  LGYKAKQG+V+ R+ VRRGG  +P  +KG    +PK  G+      +  + +AEERA R   NL VL SY++ +D  YKY+E+I+VDP+H  I+NDP   W+ +P +++R  RGLTSAGKK RGLR  KG +      G+ +  W R+
Sbjct:    3 LSVYHYIENTWNSEEWK--KGVLRQRFIEWRKEPSIVRLAKPTRLNRARSLGYKAKQGFVIVRVRVRRGGLNKPRPNKG---RRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFK------GTVKHKWSRK 189          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_ARCFU (50S ribosomal protein L15e OS=Archaeoglobus fulgidus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.434e-36
Identity = 85/195 (43.59%), Postives = 125/195 (64.10%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRK--RPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNTIGGSHRAAWKRR 626
            Y Y+ E W++     +  L+  R  ++R+   + R+ +PTR D+A  LGYKAK+G +V R+ +RRGGR+  RPN KG    K K   +N+    +NL+ +AEERA R   N+ VLNSYW+ +D  YK+FEVILVD +H AI++DP+++W+     + R  RGLTSAG+K RGLR KG R    +  S RA ++++
Sbjct:    5 YAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPN-KG---RKSKGLMVNRRTPKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSRT--RGRVYRGLTSAGRKARGLRRKG-RGAEKVRPSLRANFRKK 192          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_SULAC (50S ribosomal protein L15e OS=Sulfolobus acidocaldarius GN=rpl15e PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.485e-36
Identity = 82/205 (40.00%), Postives = 124/205 (60.49%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNTIGGSHRAAWKRRNTKVFLRYR 653
            +  Y Y+E+ W+ K  D  R +LR R  ++R+   I R+++PTR ++A  LGYKAKQG+V+ R+ VRRGG  +P        +PK  G+      +  R +AEERA R   NL VL SY++ +D  YKY+EVI+VD +H  IR+DP + W+ + V++ R  RGLTSAG+K RGL       +  + G+ +  WK++  +  L+ R
Sbjct:    3 LSMYHYIEQTWQNK--DWRRSILRKRLIEWRRQPAITRIDRPTRLNRARALGYKAKQGFVMVRVRVRRGGLNKPRPNS--GRRPKRMGVYGYGPSKGYRWIAEERAARKFPNLEVLGSYYVAEDGMYKYYEVIMVDYSHPVIRSDPELKWLQDSVNRKRVFRGLTSAGQKSRGL-----TKSRGLKGTVQRKWKKKQKERQLKRR 198          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_META3 (50S ribosomal protein L15e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.305e-35
Identity = 80/187 (42.78%), Postives = 112/187 (59.89%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNTIGG 599
            M  YK+++E W+K     ++ L   R   +R+   + RV KPTR D+A  LGYKAKQG +V R+AVRRGG ++P  K     KP    +N++   ++++ +AEERA +   NL VLNSY + +D   K++EVIL+D NH +I+ND     +    H +R  RGLTSAGKK RGL  KG  A     G
Sbjct:    1 MSMYKHVKEAWKKPSESYVKGLQWARMQDWRKEPTVVRVEKPTRIDRARSLGYKAKQGVIVARVAVRRGGLRKPRPKHSK--KPATMAMNKITMSKSIQRIAEERAAKRYPNLEVLNSYSVGEDGKRKWYEVILIDVNHPSIKNDSSYKNLCTGKHTNRVFRGLTSAGKKGRGLMNKGKGAEKVRPG 185          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_HALMA (50S ribosomal protein L15e OS=Haloarcula marismortui GN=rpl15e PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.305e-35
Identity = 77/182 (42.31%), Postives = 110/182 (60.44%), Query Frame = 3
Query:   45 AYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNT 590
            AY Y+ + W+      L  L   R  ++R    ++R+ +PTR DKA   GYKAKQG +V R++VR+G  ++  HK     + K QG+ ++   ++++ VAEERA R   NLRVLNSY + QD   K+ EVIL+DPNH AI+ND  ++WI       R  RGLT AG+++RGL  KG  +  T
Sbjct:    5 AYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKA--GRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKT 184          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_UNCMA (50S ribosomal protein L15e OS=Uncultured methanogenic archaeon RC-I GN=rpl15e PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.704e-35
Identity = 74/176 (42.05%), Postives = 109/176 (61.93%), Query Frame = 3
Query:   45 AYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKG 572
            AY Y+ + W+      +  L   R  ++R+   + ++++PTR D+A  LGYKAKQG +V R  VRRGGR++  +      K K+ G+  L    +++ +AE RA R   N+ VLNSYW+ QD  +K++E+ILVDP+H +I +D  ++WI    H+ R  RGLTSAGKK RG R KG
Sbjct:    5 AYSYIRDAWKNPSKTYVGELFWERLQEWRKEPTVVKIDRPTRLDRARALGYKAKQGIIVARAHVRRGGRRKSRYSR--GRKSKHMGLRTLTRRTSIQRMAEVRASRKFPNMEVLNSYWVGQDGKHKWYEIILVDPHHPSIASDKNLSWITKGTHRGRAERGLTSAGKKGRGQRRKG 178          
The following BLAST results are available for this feature:
BLAST of CX301595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_SULIN9.036e-3741.9250S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIM9.036e-3741.9250S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIL9.036e-3741.9250S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIK9.036e-3741.9250S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIA9.036e-3741.9250S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_ARCFU3.434e-3643.5950S ribosomal protein L15e OS=Archaeoglobus fulgid... [more]
RL15E_SULAC4.485e-3640.0050S ribosomal protein L15e OS=Sulfolobus acidocald... [more]
RL15E_META31.305e-3542.7850S ribosomal protein L15e OS=Methanococcus aeolic... [more]
RL15E_HALMA1.305e-3542.3150S ribosomal protein L15e OS=Haloarcula marismort... [more]
RL15E_UNCMA1.704e-3542.0550S ribosomal protein L15e OS=Uncultured methanoge... [more]

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Properties
Property NameValue
Genbank descriptionC08011E01SK PhyRootSw1 Citrus sinensis cDNA clone C08011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301595 ID=CX301595; Name=CX301595; organism=Citrus sinensis; type=EST; length=706bp
AATTCGGCACGAGGTTAATATCGATTAATTAAACAAAAATGGGAGCATAC
AAGTACCTCGAAGAGCTCTGGAGAAAGAAGCAATCTGATGTGCTTCGTTT
CTTGTTACGTGTTCGTGCTTGGCAATATCGTCAAACCAACAAGATCCAAC
GTGTCAACAAGCCAACTCGCCCAGACAAGGCTCACAAGTTAGGATACAAG
GCCAAGCAAGGATATGTTGTCTACCGTATCGCTGTCCGTCGTGGTGGCCG
CAAGAGACCAAACCACAAGGGTATTGTCTACGGTAAACCAAAGAACCAAG
GTATCAACCAGTTAAAGTTCGTCCGCAACTTACGCAGTGTTGCCGAGGAA
CGTGCTGGTCGTGTTGCTGCCAACTTACGTGTGTTGAACTCTTACTGGAT
CAACCAAGATGCCACCTACAAGTACTTCGAGGTCATCTTAGTCGATCCTA
ACCACGTTGCCATCAGAAACGATCCTCGCATCAACTGGATCGTTAACCCT
GTTCACAAGCACCGCGAACGCCGTGGACTTACCTCCGCTGGCAAGAAGCA
CCGCGGTCTCAGAGTCAAGGGTCACAGAGCCAACAACACCATCGGTGGTT
CCCACAGAGCTGCCTGGAAGCGCCGCAACACCAAGGTCTTCCTCAGATAC
CGTTAATCAACTTCTTCACCTCCTCCATAATGCACTTAGCGTTGTTATTC
CTCGCT
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