CX301595

Overview
NameCX301595
Unique NameCX301595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_METB6 (50S ribosomal protein L15e OS=Methanoregula boonei (strain 6A8) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.704e-35
Identity = 74/181 (40.88%), Postives = 108/181 (59.67%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNT 590
            Y Y+ E W +     ++ LL  R   +R+   + R+++PTR D+A  LGYKAKQG  V R+ VRRGGR+   +  +   +    G N     ++++ +AEERA     N+ VLNSYW+ QD   KY+EVILVD +H +I++D  + W+ NP H+ R  RG TSAG+K RG+R +G     T
Sbjct:    6 YAYVREAWARPDKSDVKALLWDRMQVWRREGSVTRIDRPTRIDRARALGYKAKQGIAVVRVHVRRGGRRASRY--VRARRSARMGKNSSTPGKSIQRIAEERASVRYPNMEVLNSYWVGQDGKLKYYEVILVDGHHPSIQSDKNLAWLANPTHRGRAERGKTSAGRKGRGMRTRGRGTEKT 184          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_METBU (50S ribosomal protein L15e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.443e-34
Identity = 72/181 (39.78%), Postives = 109/181 (60.22%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNT 590
            Y Y+ + W+      +R L   R   +R+   + RV +PTR D+A  LGYKAKQG VV R+ VRRG  ++  +  I   + ++ G N++   ++++ ++EERA R   N+ VLNSYW+ +D   K++EVILVDP+H  I++D  +NWI    H  R  RG TSAG+K RG++ +G     T
Sbjct:    6 YGYIRDAWKNPDETYVRDLRWERLQVWRKEGSVTRVERPTRIDRARSLGYKAKQGIVVARVKVRRGSMRKSRY--IRGRRTQHTGKNKITVGKSIQRISEERAARKYPNMEVLNSYWVGEDGKQKWYEVILVDPSHPVIKSDKNLNWICGKAHSGRVFRGKTSAGRKGRGMQTRGTGTEKT 184          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_METS5 (50S ribosomal protein L15e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 73/174 (41.95%), Postives = 110/174 (63.22%), Query Frame = 3
Query:   45 AYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGG--RKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGL 560
            AY ++   W  ++    + ++R R  ++R  N + R+ KPTR D+A  LGYKAKQG +V R+ V +GG  ++RPN       +PK  G+      ++L+ +AEE+A R    L VL SY++ +D  YKY+EVILVDP++  I +DP+ NW+ NP ++ R  RGLTSAG++ RGL
Sbjct:    5 AYSFMASTWASEEWK--KTVIRQRLVEWRNQNTVTRIEKPTRLDRARALGYKAKQGIIVARVKVEKGGMDKQRPNSGR----RPKRMGVYGFSPAKSLQFIAEEKAARKFPGLEVLGSYYVAEDGKYKYYEVILVDPHNPVIMSDPQFNWLKNPANRGRVFRGLTSAGRRTRGL 172          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_METAC (50S ribosomal protein L15e OS=Methanosarcina acetivorans GN=rpl15e PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 74/183 (40.44%), Postives = 107/183 (58.47%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGG--RKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNT 590
            Y Y+ + W+      +  L   R   +R+   + R+ +PTR D+A  LGYKAKQG VV R+ VRRGG    RPN       + +  G N++    +++ +AE RA R   NL VLNSYW+ +D  +K+FEVILVDP+H  I++D  +NW+ +P  + R  RG TSAG+K RG+  +G     T
Sbjct:    6 YGYVRDAWKNPDETYVNELRWERLQVWRKQGSVTRIERPTRIDRARSLGYKAKQGIVVVRVNVRRGGLGHVRPNRGR----RTQKMGKNKVSGGMSIQRIAEVRADRRYPNLEVLNSYWVGEDGKHKWFEVILVDPHHPVIKSDKNLNWVCDPSSRGRATRGKTSAGRKGRGMATRGKGTEKT 184          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_THEAC (50S ribosomal protein L15e OS=Thermoplasma acidophilum GN=rpl15e PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.641e-33
Identity = 76/174 (43.68%), Postives = 105/174 (60.34%), Query Frame = 3
Query:   42 GAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLR 563
            G Y+ + E W+  +   +  L++ R  ++R    I R+  PTR D+A  LG+K+K G++V R  VRRGG  R    G    +P+    N+L   ++L+ +AEERA     N+ VLNSY++ +D  YKYFEVILVD +H  I NDP I+WI  P +  R  RGLTSAG K RGLR
Sbjct:    5 GLYQAVREEWKSLKKSEIYDLVKKRMIEWRHGPSIVRLEHPTRIDRARALGFKSKDGFIVVRSRVRRGGSNREKIMG--GRRPRRMAYNKLTRKKSLKLIAEERAADKYPNMEVLNSYYVGEDGLYKYFEVILVDRSHPNIFNDPHISWISEPQNTGRVYRGLTSAGYKVRGLR 176          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_METMA (50S ribosomal protein L15e OS=Methanosarcina mazei GN=rpl15e PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.641e-33
Identity = 74/183 (40.44%), Postives = 106/183 (57.92%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGG--RKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNT 590
            Y Y+ + W+      +  L   R   +R+   + R+ +PTR D+A  LGYKAKQG VV R+ VRRGG    RPN       + +  G N++    +++ +AE RA R   NL VLNSYW+ +D  +K+FEVILVDP+H  I++D  +NWI +   + R  RG TSAG+K RG+  +G     T
Sbjct:    6 YGYVRDAWKNPDETYVNELRWERLQVWRKQGSVTRIERPTRIDRARSLGYKAKQGIVVVRVNVRRGGLGHVRPNRGR----RTQKMGKNKVSGGMSIQRIAEARADRKYPNLEVLNSYWVGEDGKHKWFEVILVDPHHPVIKSDKNLNWICDASIRGRATRGKTSAGRKGRGMSTRGKGTEKT 184          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_PICTO (50S ribosomal protein L15e OS=Picrophilus torridus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.916e-33
Identity = 68/174 (39.08%), Postives = 109/174 (62.64%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGL 560
            + +Y  + + W+K +   +  + + R   +R++  + R++ PTR D+A  LGYKAKQG+++ R  VR+GG+ RP   G    +P+    N+L   ++++ +AEERA     N+ VLNSY++ +D  YKY+EVIL+D +  A+ +D  ++WI N  +K R  RGLTSAG K RGL
Sbjct:    2 LSSYSMIRDSWKKLKKSDIYPVQKARMVSWRKSGSVVRLDYPTRLDRARSLGYKAKQGFIIVRSRVRKGGQHRPKIMG--GRRPRRLAYNKLTVKKSIQLIAEERAADKYPNMEVLNSYYVGEDGLYKYYEVILIDRSSPAVLSDKNVSWIANSANKGRVYRGLTSAGYKSRGL 173          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_THEVO (50S ribosomal protein L15e OS=Thermoplasma volcanium GN=rpl15e PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.701e-32
Identity = 79/193 (40.93%), Postives = 112/193 (58.03%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNTIGGSHRAAWKRR 626
            Y+ + E W+  +   +  + + R   +R    + R++ PTR D+A  LGYK+K G++V R  VRRGG  R    G    +P+    N+L   ++L+ +AEERA     NL VLNSY++ +D  YKY+EVILVD +H  I NDP I+WI  P +  R  RGLTSAG K RGLR  G + ++    S RA  + R
Sbjct:    7 YQEIREEWKSLKKSEIYDVEKSRMIGWRHGPSVVRLDHPTRIDRARALGYKSKDGFIVVRSRVRRGGSNREKIMG--GRRPRRLAYNKLTRKKSLKLIAEERAADKYPNLEVLNSYYVGEDGLYKYYEVILVDKSHPNIYNDPHISWISEPQNTGRVYRGLTSAGYKVRGLRT-GRKGSSKSRPSIRANGRLR 196          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_METLZ (50S ribosomal protein L15e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.409e-31
Identity = 71/176 (40.34%), Postives = 109/176 (61.93%), Query Frame = 3
Query:   48 YKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQ-GINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKG 572
            Y Y+ + W+K     ++ LL  R   +R+   + R+ +PTR D+A +LGYKAKQG +V R ++RRGGR++  +   + G+  N+ G+ +    +NL+S+AEERA     N+ VLNSYW+ QD   KY+EVILVD N  ++  D  + W+ +   + R  RG TSAG++ RGL  +G
Sbjct:    6 YGYVRDAWKKPAESGVKKLLWERMQTWRRQGAVVRLERPTRIDRARELGYKAKQGIIVVRASIRRGGRRKSRY---IRGRRTNRMGMRKATPGKNLQSIAEERAATRYPNMEVLNSYWVGQDGKSKYYEVILVDRNSPSVLADKNLAWVADT--RGRVFRGKTSAGRRARGLHNRG 176          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_NANEQ (50S ribosomal protein L15e OS=Nanoarchaeum equitans GN=rpl15e PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27
Identity = 77/199 (38.69%), Postives = 105/199 (52.76%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIVNPVHKHRERRGLTSAGKKHRGLRVKGHRANNTIGGSHRAAWKRRNTK 635
            MG Y+Y+  L+ K   + L  L + R  Q+R+   I  V +PTR D+A  LGYK   G  + R+ VR+G RKR   KG   G+             NL+ +AEERA R+  N+ VL SYW+ +D  YK++EVILVDP +  I N P   W++    + R  RG TS+ +K RGLR      N  +G       KR N K
Sbjct:    1 MGLYQYVRALY-KDPKEFLGELYKQRIQQWRREPPIVEVERPTRIDRARALGYKPLPGIKIVRVRVRKGTRKREEIKG---GRRPKAEYRIRPLGVNLQWIAEERANRLHRNMEVLGSYWVGEDGLYKWYEVILVDPFNPNIYNRPEYVWLLQKNQRGRVFRGKTSSARKFRGLR------NGGLGAEKVRPSKRANFK 189          
The following BLAST results are available for this feature:
BLAST of CX301595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_METB61.704e-3540.8850S ribosomal protein L15e OS=Methanoregula boonei... [more]
RL15E_METBU1.443e-3439.7850S ribosomal protein L15e OS=Methanococcoides bur... [more]
RL15E_METS57.160e-3441.9550S ribosomal protein L15e OS=Metallosphaera sedul... [more]
RL15E_METAC7.160e-3440.4450S ribosomal protein L15e OS=Methanosarcina aceti... [more]
RL15E_THEAC4.641e-3343.6850S ribosomal protein L15e OS=Thermoplasma acidoph... [more]
RL15E_METMA4.641e-3340.4450S ribosomal protein L15e OS=Methanosarcina mazei... [more]
RL15E_PICTO7.916e-3339.0850S ribosomal protein L15e OS=Picrophilus torridus... [more]
RL15E_THEVO6.701e-3240.9350S ribosomal protein L15e OS=Thermoplasma volcani... [more]
RL15E_METLZ7.409e-3140.3450S ribosomal protein L15e OS=Methanocorpusculum l... [more]
RL15E_NANEQ1.001e-2738.6950S ribosomal protein L15e OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionC08011E01SK PhyRootSw1 Citrus sinensis cDNA clone C08011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301595 ID=CX301595; Name=CX301595; organism=Citrus sinensis; type=EST; length=706bp
AATTCGGCACGAGGTTAATATCGATTAATTAAACAAAAATGGGAGCATAC
AAGTACCTCGAAGAGCTCTGGAGAAAGAAGCAATCTGATGTGCTTCGTTT
CTTGTTACGTGTTCGTGCTTGGCAATATCGTCAAACCAACAAGATCCAAC
GTGTCAACAAGCCAACTCGCCCAGACAAGGCTCACAAGTTAGGATACAAG
GCCAAGCAAGGATATGTTGTCTACCGTATCGCTGTCCGTCGTGGTGGCCG
CAAGAGACCAAACCACAAGGGTATTGTCTACGGTAAACCAAAGAACCAAG
GTATCAACCAGTTAAAGTTCGTCCGCAACTTACGCAGTGTTGCCGAGGAA
CGTGCTGGTCGTGTTGCTGCCAACTTACGTGTGTTGAACTCTTACTGGAT
CAACCAAGATGCCACCTACAAGTACTTCGAGGTCATCTTAGTCGATCCTA
ACCACGTTGCCATCAGAAACGATCCTCGCATCAACTGGATCGTTAACCCT
GTTCACAAGCACCGCGAACGCCGTGGACTTACCTCCGCTGGCAAGAAGCA
CCGCGGTCTCAGAGTCAAGGGTCACAGAGCCAACAACACCATCGGTGGTT
CCCACAGAGCTGCCTGGAAGCGCCGCAACACCAAGGTCTTCCTCAGATAC
CGTTAATCAACTTCTTCACCTCCTCCATAATGCACTTAGCGTTGTTATTC
CTCGCT
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