CX301595

Overview
NameCX301595
Unique NameCX301595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15E_PYRAE (50S ribosomal protein L15e OS=Pyrobaculum aerophilum GN=rpl15e PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25
Identity = 72/171 (42.11%), Postives = 97/171 (56.73%), Query Frame = 3
Query:   45 AYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRG--GRKRPNHKGIVYGKPKNQGINQLKFVRNLRSVAEERAGRVAANLRVLNSYWINQDATYKYFEVILVDPNHVAIRNDPRINWIV-NPVHKHRERRGLTSAGKK 548
            AY Y+   +RK   +V   L+R    ++R+   I RV +P R ++A KLGYKAKQG VV R+ + RG   R+RP+       +PK  G+  +   ++ R VAEERA R   NL VLNSYW+  D  Y+YFEVIL+D N   I+NDP  + I    V + R  R L    KK
Sbjct:    5 AYSYMAMWYRKIGREVHERLMRKILIEWRKAPAIVRVERPFRLERARKLGYKAKQGVVVVRVRLMRGPFNRRRPDSGR----RPKRMGVYGITAWKSWRQVAEERAARKHPNLEVLNSYWVADDGIYRYFEVILIDCNLPTIKNDPLYSGICGREVPRRRIIRRLRERQKK 171          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15_BRUPA (60S ribosomal protein L15 (Fragment) OS=Brugia pahangi PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 43/71 (60.56%), Postives = 60/71 (84.51%), Query Frame = 3
Query:   39 MGAYKYLEELWRKKQSDVLRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGR 251
            MGAY+Y++ELWRKK+S+ +R+LLR+R WQYRQ   I RV++PTRP+KA +LGY + +GY++YR+ V RGGR
Sbjct:    1 MGAYRYMQELWRKKKSETMRYLLRIRCWQYRQLTAIHRVSRPTRPEKARRLGYLSNEGYIIYRVRVLRGGR 71          
BLAST of CX301595 vs. ExPASy Swiss-Prot
Match: RL15_BRANA (60S ribosomal protein L15 (Fragment) OS=Brassica napus GN=RPL15 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.733e-17
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 3
Query:   93 LRFLLRVRAWQYRQTNKIQRVNKPTRPDKAHKLGYKAKQGYVVYRIAVRRGGRKRPNHKGIVYGKPKNQ 299
            +RF+ RVR W+YRQ   I R+ +PTRPDKA +LGYKAKQG+VVYR+ VRRGGRKRP  K +    P+ +
Sbjct:    3 MRFVQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKVLCMVNPQTR 71          
The following BLAST results are available for this feature:
BLAST of CX301595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_PYRAE2.088e-2542.1150S ribosomal protein L15e OS=Pyrobaculum aerophil... [more]
RL15_BRUPA7.427e-2360.5660S ribosomal protein L15 (Fragment) OS=Brugia pah... [more]
RL15_BRANA2.733e-1759.4260S ribosomal protein L15 (Fragment) OS=Brassica n... [more]

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Properties
Property NameValue
Genbank descriptionC08011E01SK PhyRootSw1 Citrus sinensis cDNA clone C08011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301595 ID=CX301595; Name=CX301595; organism=Citrus sinensis; type=EST; length=706bp
AATTCGGCACGAGGTTAATATCGATTAATTAAACAAAAATGGGAGCATAC
AAGTACCTCGAAGAGCTCTGGAGAAAGAAGCAATCTGATGTGCTTCGTTT
CTTGTTACGTGTTCGTGCTTGGCAATATCGTCAAACCAACAAGATCCAAC
GTGTCAACAAGCCAACTCGCCCAGACAAGGCTCACAAGTTAGGATACAAG
GCCAAGCAAGGATATGTTGTCTACCGTATCGCTGTCCGTCGTGGTGGCCG
CAAGAGACCAAACCACAAGGGTATTGTCTACGGTAAACCAAAGAACCAAG
GTATCAACCAGTTAAAGTTCGTCCGCAACTTACGCAGTGTTGCCGAGGAA
CGTGCTGGTCGTGTTGCTGCCAACTTACGTGTGTTGAACTCTTACTGGAT
CAACCAAGATGCCACCTACAAGTACTTCGAGGTCATCTTAGTCGATCCTA
ACCACGTTGCCATCAGAAACGATCCTCGCATCAACTGGATCGTTAACCCT
GTTCACAAGCACCGCGAACGCCGTGGACTTACCTCCGCTGGCAAGAAGCA
CCGCGGTCTCAGAGTCAAGGGTCACAGAGCCAACAACACCATCGGTGGTT
CCCACAGAGCTGCCTGGAAGCGCCGCAACACCAAGGTCTTCCTCAGATAC
CGTTAATCAACTTCTTCACCTCCTCCATAATGCACTTAGCGTTGTTATTC
CTCGCT
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