CN191739

Overview
NameCN191739
Unique NameCN191739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191739 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.907e-54
Identity = 104/207 (50.24%), Postives = 131/207 (63.29%), Query Frame = 1
Query:  115 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVSNN 732
            W  A A++Y              +G+L   GYG  T  LSTALF  G +CG C+E+KCV+D ++C PG SI VTATNFC          GG CNPP  HF L    FE+IA +KAG++P+ YRRV C R GG+RF + G S+F  VLI+NVGGAGDVR+V IKG+ + W  M RNWGQ W  NS   GQ LSF++T+SDG T+ + N
Sbjct:   33 WRSAKASYYAADPEDAIGGACG-FGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYN 238          
BLAST of CN191739 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.657e-52
Identity = 102/207 (49.28%), Postives = 131/207 (63.29%), Query Frame = 1
Query:  112 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKC--VNDPRWC-RPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQY-KAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSR-TDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHT 717
            GW  AHAT+Y              Y N Y  G+G +TAALS  LF +G SCG C++++C    DP+WC R  ++ VTATNFC           GWCN P+ HFD+S P F +IA+    GIVPV YRRV C R+GG+RFT+ G   FN+V+I+NVGG G VR+V+++GS+   W  M+RNWG NWQS+  L GQ LSFKVT +D  T
Sbjct:   26 GWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPTNNN-----NGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKT 227          
BLAST of CN191739 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 8.146e-52
Identity = 104/202 (51.49%), Postives = 128/202 (63.37%), Query Frame = 1
Query:  115 WTDAHATFYXXXXXXXXXXXXXX-YGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHT 717
            W DA A +Y               YG+L   GYG  TAALSTALFN+G SCGAC+EI C  +P+ C  GSI +TAT+ C            WC  P +HFDLS P+F +IAQ KA +VPV YRRVPC++ GG++F + G+     +L  NVGGAGD+ AVS KGS+T W  MSR WGQNW +N  L GQS+S +VTTSDG T
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPG-------SAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGIT 239          
BLAST of CN191739 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.096e-51
Identity = 103/210 (49.05%), Postives = 134/210 (63.81%), Query Frame = 1
Query:  115 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGG--WCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIK-GSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTT-SDGHTVVS 726
            WT AHATFY              YGNLY+ GYGT+TAALST LF +G  CG C++++CV     C  GS  I VTATN C          GG  WCNPP+ HFDLS+P F ++A ++AGIVPV YRRVPC+R GG+RF + G+ Y+ L  + NV GAGDV  + +K G    W  MS NWG ++Q+ + L GQ+LSFKVT+ + G T+++
Sbjct:   37 WTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILA 245          
BLAST of CN191739 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.007e-51
Identity = 97/183 (53.01%), Postives = 122/183 (66.67%), Query Frame = 1
Query:  184 YGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVS 726
            YG+L    YG  TA +S ALF  G +CG C+E++CVN   WC  GS  + VTAT+FC          GGWCN P++HF++S+  F ++A+ KA IVPV +RRV C R GG+RFTI G + F  VLITNV   G+V AV +KGSRT W PM RNWGQNWQ ++ L GQ LSF+VT   G TVV+
Sbjct:   57 YGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVA 239          
BLAST of CN191739 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.536e-50
Identity = 100/206 (48.54%), Postives = 128/206 (62.14%), Query Frame = 1
Query:  115 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCV--NDPRWCRPG-SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVV 723
            W    ATFY              YGNLY + YG N AALST LFN+G SCG C+ I C     P WC+ G +I VT TN+           GGWCN  + +FD+SQP +E I  Y AGIVP+ Y++V C R GG+RF ING +YF LVL+TN+ G+G + ++S+KGS T W  M+RNWG NWQ  + L GQ+LSF VT++ G T+V
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIV 217          
BLAST of CN191739 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.455e-49
Identity = 92/183 (50.27%), Postives = 120/183 (65.57%), Query Frame = 1
Query:  184 YGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGSRTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVS 726
            YG+L    +   +A LS  LFN G SCGAC E++CVN  RWC  GS  + VTAT+FC          GGWCN P++H +LS   F  IA+ +A ++P+ YRRV C R+GG+RF+++G S+F  VLI+NVG  G+V  V +KG  T W PM+RNWGQNW S+  L GQSLSF+VT   G T+ S
Sbjct:   53 YGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIAS 235          
BLAST of CN191739 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.480e-42
Identity = 90/203 (44.33%), Postives = 115/203 (56.65%), Query Frame = 1
Query:  115 WTDAHATFYXXXXXXXXXXXXXX--YGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIK--GSRTDWQPMSRNWGQNWQSNSYL-NGQSLSFKVTT 702
            W D  ATFY                  N     Y T TAALST LF +G  CG C+E++CV  P WC PGS  + +T TN C          GGWCNPP+ HFD++ P F ++AQ  AGIVPV YRRVPC R GG+RF + G+ Y+ L+ + NVGGAGDV ++S+K  G    W   + NWG  +Q  + L N   L+ K+TT
Sbjct:   52 WHDGSATFYGDPSGMGDDFGGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTT 253          
BLAST of CN191739 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.033e-38
Identity = 85/205 (41.46%), Postives = 119/205 (58.05%), Query Frame = 1
Query:  115 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGS-RTDWQPMSRNWGQNWQSNSYLNGQSLSFKVTTSDGHTVVS 726
            W D HATFY               G   ++GYG  TAA+S ALF+NG  CGAC+E+K  +        ++ VTATN                    +HFDL+ P F  IA+ K G+VPVSYR+V C R+GGI++TI G+  +N+V++ NVGGAGDV  +++KG+ R  W P+ R+WGQ W++ + L G+SL+F+V T D     S
Sbjct:   82 WVDGHATFYGGRDASGTTEGGAC-GYKDADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPPPVNGMKG---------EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATS 270          
BLAST of CN191739 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.222e-20
Identity = 64/224 (28.57%), Postives = 100/224 (44.64%), Query Frame = 1
Query:  106 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEG-YGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQ-------YKAGIVPVSYRRVPCSRKGGIRFTINGHS--YFNLVLITNVGGAGDVRAVSIKGSR--TDWQPMSRNWGQNWQSNSYLN---GQSLSFKVTTSDGHTVVSNN 732
            G GW+   AT+Y              Y +   +  + +  AA   +LF NG  CG+C++IKC  + R C    + V  T+ C          GG C     HFD+S   F  +A          AG++ + Y+RVPC     + F ++  S  Y+  +L+    G GD+ AV I  +R    W+ M ++WG  W+ NS          S ++T+  G  +V+NN
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACSGRPVTVVITDSC---------PGGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANN 255          
The following BLAST results are available for this feature:
BLAST of CN191739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
EXP10_ORYSJ3.907e-5450.24Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH3.657e-5249.28Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP21_ARATH8.146e-5251.49Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP30_ORYSJ3.096e-5149.05Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP16_ORYSJ9.007e-5153.01Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ1.536e-5048.54Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH6.455e-4950.27Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP17_ORYSJ4.480e-4244.33Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ1.033e-3841.46Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB5_ORYSJ8.222e-2028.57Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005L20_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191739 ID=CN191739; Name=CN191739; organism=Citrus sinensis; type=EST; length=734bp
GAGGTTCTCTCTTACAAAAAGATACGCAAGCAAAAGGGTTTCAGGAACAT
GGCATTTCTTGGGCTGCTGTTGTTGGGGATTCTTTCTTTAGTCTCATCTG
TTTATGGCCAGGGATGGACTGATGCTCATGCCACTTTTTATGGTGGGGGT
GATGCCTCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAACTTATACAG
CGAGGGATATGGGACAAACACAGCAGCTCTGAGCACTGCACTTTTCAACA
ATGGCATGAGCTGTGGGGCTTGTTTTGAGATCAAGTGTGTTAATGACCCA
AGATGGTGCCGTCCGGGCTCCATTTTTGTTACTGCCACAAATTTTTGCCC
TCCAAATAATGCTCTCCCAAACAATGCCGGTGGCTGGTGCAATCCTCCCC
AGCAACATTTTGACCTCTCTCAGCCTGTGTTTGAACAAATTGCTCAGTAC
AAAGCTGGGATAGTACCTGTGTCTTACAGAAGGGTTCCATGCAGTAGGAA
GGGAGGCATCAGATTCACGATCAACGGCCATTCTTACTTCAACTTAGTCC
TAATCACAAACGTCGGAGGCGCTGGTGATGTGCGTGCTGTTTCAATCAAA
GGGTCAAGAACTGATTGGCAACCCATGTCAAGGAACTGGGGTCAAAACTG
GCAAAGTAACAGTTACCTCAATGGCCAAAGCCTCTCATTTAAGGTCACCA
CAAGTGATGGCCACACTGTTGTCTCTAACAATGT
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