CN191732

Overview
NameCN191732
Unique NameCN191732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: YDIB_SALA4 (Quinate/shikimate dehydrogenase OS=Salmonella agona (strain SL483) GN=ydiB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.500e-16
Identity = 70/229 (30.57%), Postives = 111/229 (48.47%), Query Frame = -2
Query:  172 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGH-YALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIM 837
            G   ++P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    +RG+  V   +GG ++A+  +    I                   V  A R  +   +   TV   A   A  E     D  IL N T +GM+P  +E+ I   +L     LV + VY P +T+LL++A+++G   + G  M + Q  EQ+E +TG   P +  +++M
Sbjct:   63 GTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIRGKTMVLLGAGGAATAIGAQ--AAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENT-DCVVTVTDLADQHAFTEALASAD--ILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQVM 284          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_PELPD (Shikimate dehydrogenase OS=Pelobacter propionicus (strain DSM 2379) GN=aroE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.500e-16
Identity = 74/242 (30.58%), Postives = 109/242 (45.04%), Query Frame = -2
Query:  172 FFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLF-GYNTDYVGAISAIE------DGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDE-TPIPKHALG-HYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIM 870
            F Q+    +  G   TIPHK++ +   D V    K++GA N +     DG L  G NTD +G +S ++      +  R  +  +GGV+ A    L                      ++ I +     +  LAET     L        +  D  IL NTT +GM+ K +E +P P  AL     + +D VYTP +TR LREA  +G   + GLEMFI QA  Q+  +TG   P+   Q ++
Sbjct:   52 FIQSVRLLNIRGACVTIPHKQSIIPLLDRVTDRVKALGAANTLYW---DGDLLCGDNTDILGFMSPLQADPPSAEQTRVLVLGAGGVARAAVAGL----------------KSLGLNQITITDIVDASSATLAETFD---LKTIPWSQRSEVDAHILINTTPLGMKGKFEEESPYPTEALAARQGIAYDIVYTPFVTRFLREARAAGWKTIGGLEMFISQADHQFLTWTGRNLPQAAKQAVI 271          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_IGNH4 (Shikimate dehydrogenase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=aroE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.500e-16
Identity = 65/231 (28.14%), Postives = 108/231 (46.75%), Query Frame = -2
Query:  169 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED-----GLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGL-PAPKELFQKIMA 843
            F G + TIPHK   +K  D  D +   +GA N +  +  DGK++ +NTD  G   +I+D     GL+  +  +GG + A    L                     A+V + NRT ++A+ LAE +G     L +++     D  I+ N T +GM       PIP   +    ++ D VY P  T  L+     GA  V+GL+M + Q  E  + + G  P  ++++++++A
Sbjct:   53 FNGINVTIPHKVEVLKYVDVADDLVNEVGAANTL--KIKDGKIYAFNTDVEGVRGSIKDAVDPKGLKVAVLGAGGAARAAVVAL------------------RDEAQVTVFNRTLEKAKRLAEELGVDYAGLNEVDKIKKHD--IIINATPVGMDGV--SMPIPPDVIESRHVLMDMVYRPLYTPFLKVGLAKGAKTVNGLKMLVIQGMESEKVWLGASPYWRDVYERLLA 259          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_CALS8 (Shikimate dehydrogenase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=aroE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.500e-16
Identity = 66/216 (30.56%), Postives = 102/216 (47.22%), Query Frame = -2
Query:  229 DFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED------GLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGM--ILANTTSIGMQPKVDETP--IPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYE 846
            D  GF+ TIP+KE  ++ CDEV    + I A N +  ++   KL  YNTD++G   ++E+        R  +  +GG + A    L+                      V +ANRTY++A  L E V    L +  +E     +    I+ NTTS+GM P ++ +P     +  G    V+D +Y P  T  L EAE+ G+   +GL+M + QA E
Sbjct:   56 DVVGFNITIPYKEDILEFCDEVSEDVRIIQAANTV--KKEGEKLVAYNTDWLGFKRSLEEVGISVKDKRILILGAGGAAKACIYGLY----------------RMGVKEVFVANRTYEKAESLKE-VFQDILKILPVEWLRRYEFKYDIIINTTSVGMFPNIESSPFDFENYVAGIPVFVYDMIYNPPKTTFLEEAEKKGSKTENGLKMLVYQAVE 252          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_BRUAB (Shikimate dehydrogenase OS=Brucella abortus GN=aroE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.500e-16
Identity = 73/234 (31.20%), Postives = 108/234 (46.15%), Query Frame = -2
Query:  208 AKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGL-------RGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGG--HALSLADLENFNPEDGMILANTTSIGM--QPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 876
            + F  + ++N FAG + TIPHKEAA    + +D  A++IGAVN +     +G+L G NTD  G  + ++          R  +  +GG S A+   L                       V + NRT  RA ELA   G   +A S  + +      G+I+ NTT++GM    +  + PI        A+  D VY P  T  L +AE++G   V GL M + QA   +ER+ G
Sbjct:   52 SSFAASLAANGFAGGNVTIPHKEAAYAAAESLDEAARAIGAVNTL--WLENGRLCGGNTDAYGFAANLDASAPGWDKADRALVLGAGGASRAVVHALL----------------SRGVCHVSVVNRTLSRAEELAAHFGARVYAHSWDEAQALVSNAGLIV-NTTALGMSGHGEGQDFPIDLTCAPKEAVATDIVYVPLRTAFLNKAEKAGLKTVDGLGMLLHQAVPGFERWFG 266          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_BRUA2 (Shikimate dehydrogenase OS=Brucella abortus (strain 2308) GN=aroE PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.500e-16
Identity = 73/234 (31.20%), Postives = 108/234 (46.15%), Query Frame = -2
Query:  208 AKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGL-------RGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGG--HALSLADLENFNPEDGMILANTTSIGM--QPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 876
            + F  + ++N FAG + TIPHKEAA    + +D  A++IGAVN +     +G+L G NTD  G  + ++          R  +  +GG S A+   L                       V + NRT  RA ELA   G   +A S  + +      G+I+ NTT++GM    +  + PI        A+  D VY P  T  L +AE++G   V GL M + QA   +ER+ G
Sbjct:   52 SSFAASLAANGFAGGNVTIPHKEAAYAAAESLDEAARAIGAVNTL--WLENGRLCGGNTDAYGFAANLDASAPGWDKADRALVLGAGGASRAVVHALL----------------SRGVCHVSVVNRTLSRAEELAAHFGARVYAHSWDEAQALVSNAGLIV-NTTALGMSGHGEGQDFPIDLTCAPKEAVATDIVYVPLRTAFLNKAEKAGLKTVDGLGMLLHQAVPGFERWFG 266          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_BRUA1 (Shikimate dehydrogenase OS=Brucella abortus (strain S19) GN=aroE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.500e-16
Identity = 73/234 (31.20%), Postives = 108/234 (46.15%), Query Frame = -2
Query:  208 AKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGL-------RGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGG--HALSLADLENFNPEDGMILANTTSIGM--QPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 876
            + F  + ++N FAG + TIPHKEAA    + +D  A++IGAVN +     +G+L G NTD  G  + ++          R  +  +GG S A+   L                       V + NRT  RA ELA   G   +A S  + +      G+I+ NTT++GM    +  + PI        A+  D VY P  T  L +AE++G   V GL M + QA   +ER+ G
Sbjct:   52 SSFAASLAANGFAGGNVTIPHKEAAYAAAESLDEAARAIGAVNTL--WLENGRLCGGNTDAYGFAANLDASAPGWDKADRALVLGAGGASRAVVHALL----------------SRGVCHVSVVNRTLSRAEELAAHFGARVYAHSWDEAQALVSNAGLIV-NTTALGMSGHGEGQDFPIDLTCAPKEAVATDIVYVPLRTAFLNKAEKAGLKTVDGLGMLLHQAVPGFERWFG 266          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: YDIB_ECO5E (Quinate/shikimate dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ydiB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.960e-16
Identity = 69/240 (28.75%), Postives = 117/240 (48.75%), Query Frame = -2
Query:  172 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRT---YDRARELAETVGGHA------LSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPKHALGHYAL-VFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIM 837
            G   ++P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    ++G+  V   +GG S+A+  +  +                     + + NR    +D+A   A+ V  +         LAD + F        IL N T +GM+P  +++ +   +L H  L V + VY P +T+LL++A+++G   + G  M + Q  EQ+  +TG   P E  +++M
Sbjct:   63 GTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI----------------EGLKEIKLFNRRDKFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENKSLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM 284          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: YDIB_ECO57 (Quinate/shikimate dehydrogenase OS=Escherichia coli O157:H7 GN=ydiB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.960e-16
Identity = 69/240 (28.75%), Postives = 117/240 (48.75%), Query Frame = -2
Query:  172 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRT---YDRARELAETVGGHA------LSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPKHALGHYAL-VFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIM 837
            G   ++P+K+ A +  DE+   AK +GA+N I+    DG L GYNTD  G I AI++    ++G+  V   +GG S+A+  +  +                     + + NR    +D+A   A+ V  +         LAD + F        IL N T +GM+P  +++ +   +L H  L V + VY P +T+LL++A+++G   + G  M + Q  EQ+  +TG   P E  +++M
Sbjct:   63 GTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI----------------EGLKEIKLFNRRDKFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENKSLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM 284          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_UNCMA (Shikimate dehydrogenase OS=Uncultured methanogenic archaeon RC-I GN=aroE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.960e-16
Identity = 77/227 (33.92%), Postives = 106/227 (46.70%), Query Frame = -2
Query:  178 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHA----LSLADL-ENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQK 843
            F G + TIPHKEAA++   E D  A  IGA N +  +Q    +  +NTD  GAI A+ DG         GV   L  K  +V+                 A V IANRT  +A +LA  +         SL  L E     D  I+ NTT IGM  + D+  + +  L     VFD VY P  T LLREA  +GA  + G+ M   Q  + +E +TG+  P ++ ++
Sbjct:   56 FGGLNVTIPHKEAALRIM-EPDRTALEIGAANTLDFKQ----MRAFNTDAAGAIDALRDG---------GVE--LENKGVLVLGAGGAARAVVYGLVKEGATVTIANRTTAKAADLAAYMRSFGSVFGTSLDSLGEKVRAVD--IVINTTPIGMGWE-DKPLVTRDMLDRSQAVFDLVYRPVETPLLREARAAGAKTIDGISMLARQGAKSFEIWTGVKPPVDVMER 263          
The following BLAST results are available for this feature:
BLAST of CN191732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
YDIB_SALA41.500e-1630.57Quinate/shikimate dehydrogenase OS=Salmonella agon... [more]
AROE_PELPD1.500e-1630.58Shikimate dehydrogenase OS=Pelobacter propionicus ... [more]
AROE_IGNH41.500e-1628.14Shikimate dehydrogenase OS=Ignicoccus hospitalis (... [more]
AROE_CALS81.500e-1630.56Shikimate dehydrogenase OS=Caldicellulosiruptor sa... [more]
AROE_BRUAB1.500e-1631.20Shikimate dehydrogenase OS=Brucella abortus GN=aro... [more]
AROE_BRUA21.500e-1631.20Shikimate dehydrogenase OS=Brucella abortus (strai... [more]
AROE_BRUA11.500e-1631.20Shikimate dehydrogenase OS=Brucella abortus (strai... [more]
YDIB_ECO5E1.960e-1628.75Quinate/shikimate dehydrogenase OS=Escherichia col... [more]
YDIB_ECO571.960e-1628.75Quinate/shikimate dehydrogenase OS=Escherichia col... [more]
AROE_UNCMA1.960e-1633.92Shikimate dehydrogenase OS=Uncultured methanogenic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005L14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191732 ID=CN191732; Name=CN191732; organism=Citrus sinensis; type=EST; length=880bp
CTAAGAAATTTAGGATTTTATTTCCATACATAAANATTGAGGTACAAGTA
GACCTTTTATATTTTTGTCAGAAGAAAAAAATGAACAACGATGCTTCATG
TTGAATTACGCTAGAAAACAAAATCAGCAACATGTAATGGATTGACCAAA
CAGACCACACTAGTACTTTGCCATGATTTTCTGAAATAGTTCCTTCGGCG
CAGGCAATCCAGTGAATCTTTCATACTGTTCATATGCCTGTCCAATGAAC
ATCTCCAGCCCTGACACAATTGTGGCTCCAGATTCCTCTGCTTCTCTCAA
GAGTCTGGTAATTTTCGGGGTGTAAACAGCATCAAAGACCAGCGCATAAT
GTCCCAAAGCATGCTTCGGAATAGGTGTTTCATCAACTTTTGGCTGCATT
CCAATGGACGTTGTGTTTGCAAGAATCATGCCATCCTCCGGATTAAAATT
TTCCAGGTCGGCAAGAGATAAAGCATGTCCTCCTACAGTCTCTGCAAGTT
CTCTGGCTCGATCATAAGTGCGATTGGCAATCACAACCCTTGCTCCCTTT
GCTTTTGCACCATAAGCAAGTGCCTTGCCAGCACCACCAGCTCCAATGAC
CACAAATAACTTACCTGCTAATGCTGAGCTGACCCCACCACTGACATTAA
GTCTACCTCTTAGTCCATCCTCAATAGCAGAAATAGCACCAACATAGTCT
GTATTGTAACCAAATAACTTCCCATCACTTTGTCTTCTTATGATACAATT
AACAGCTCCTATTGACTTGGCAACTGTATCAACCTCATCACAACACTTCA
CTGCTGCCTCTTTGTGAGGAATTGTGCAACTGAATCCGGCAAAATCGTTG
GACGAATAAGTCTGGAAAAATTTTGCAATG
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