CN191732

Overview
NameCN191732
Unique NameCN191732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_BACCN (Shikimate dehydrogenase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=aroE PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.815e-23
Identity = 77/223 (34.53%), Postives = 116/223 (52.02%), Query Frame = -2
Query:  205 AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE----DGLRGR---LNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELA----ETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGL 840
            +G + T PHK A +K  DE+D +AK IGAVN ++ R  +GKL GYNTD +G + +++    + LR +   L  +GG   A+   L                       + IANRT + A++L     E V   ALSL        E+  +L  TT+IGM P V  TP+   +L   A+V D +Y P  T+ L +A+ SGA + +G++MF+ Q    +E +TG+
Sbjct:   57 SGINVTTPHKVAIMKYLDEIDPLAKQIGAVNTVVHR--NGKLVGYNTDGIGYVRSLQAISKEPLRHKRMLLLGAGGACRAIYCSLVAA----------------GVKEIDIANRTVETAKQLIASSKERVVSKALSLEKATEAQ-ENYDVLIQTTTIGMHPHVQHTPMQIGSLKQGAIVSDIIYNPFETKFLHDAKLSGAIVQNGIDMFVYQGALAFEMWTGM 260          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_METAC (Shikimate dehydrogenase OS=Methanosarcina acetivorans GN=aroE PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.214e-23
Identity = 82/234 (35.04%), Postives = 118/234 (50.43%), Query Frame = -2
Query:  178 FAGFSCTIPHKEAAVKCCDEV--DTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHAL-------SLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQK 843
            F G + T+P KE A+K  D +  D +A+ IGAVN ++  ++ G++ GYNTD +GA  A+ +    +RG   V  G   A     F +                    + + NRT +RA ELA+ V   +L        L+ L+     D  IL NTT++GM P  D T      L     VFD VY P  TRLL+EA+ +GA  VSG+ M + Q  E ++ +TG+ AP EL +K
Sbjct:   56 FGGLNLTVPLKEEALKL-DFIRPDPLAERIGAVNTVVFSET-GEIRGYNTDGLGARQALLEAAVEIRGSKVVVAGAGGAARAVAFQLAADGA--------------EITVVNRTEERAVELAKDVAAASLPGKINGTGLSGLKELL-RDADILINTTTLGMHPNTDTTIATAEELHSGLTVFDIVYNPLETRLLKEAKVAGAKTVSGVLMLVYQGAEAFKLWTGVEAPAELMKK 272          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_THETN (Shikimate dehydrogenase OS=Thermoanaerobacter tengcongensis GN=aroE PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.390e-22
Identity = 71/222 (31.98%), Postives = 112/222 (50.45%), Query Frame = -2
Query:  208 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTD---YVGAISAIEDGLRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHA------LSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 837
            GF+ T+PHKE+ +   D V   A+ IGAVN ++    +G L GYNTD   ++ ++  +++ +RGR      +GG S A+   L                       +VIANRT ++A+ LAE +           S+ ++E FN  D  IL NTTS+GM P+V  +P+ +  +     V+D +Y P  T  L+ A ++G    +GL M + QA   +  +TG
Sbjct:   63 GFNVTVPHKESVMNYLDFVTEEAEKIGAVNTVVNE--NGILKGYNTDVQGFIDSLKELKEDVRGRKAFVLGAGGASKAICFAL----------------AREGVESIVIANRTLNKAKALAEYIREEFKMKCDYCSIEEVEKFNEID--ILINTTSVGMHPEVGNSPVSEEVVAKANFVYDLIYNPSETLFLKYARKNGVKSANGLSMLVNQASYAFYLWTG 264          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_EXIS2 (Shikimate dehydrogenase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=aroE PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.081e-22
Identity = 76/236 (32.20%), Postives = 111/236 (47.03%), Query Frame = -2
Query:  166 FFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGK-LFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIMAK 870
            F Q      F G + TIPHK A +   D ++  A   GAVN +     DG+ L G NTD  G   A+      + ++  G   A  G + ++                    V + NRT   A ++A   G  A+  +   +  P D  ++ NTTS+GM P +D+TPI   A    AL+ D +Y P  TRLLREA  +G   + G+ MF+ QA E +ERFTG      L ++++ K
Sbjct:   45 FVQKVRKRQFDGINVTIPHKSAIIPFLDRLEPAAARAGAVNTVYW---DGEELVGANTDGTGFARALATWTNAKNSLVIGAGGAARGIIPML-----------------PGHVTVMNRTNQTAEQVAAEFGQSAVPWSRTLDLTPYD--VIINTTSVGMAPAIDQTPIELTATT--ALICDIIYRPTPTRLLREATANGLDTLDGVLMFVLQAAEAFERFTGHKPDIALGEQVIRK 256          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_STAES (Shikimate dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=aroE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.549e-21
Identity = 74/225 (32.89%), Postives = 111/225 (49.33%), Query Frame = -2
Query:  205 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTD---YVGAISAIEDGLRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLAD--LENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGL 855
            S     GF+ TIPHKE  +   D+++  AKS+GAVN ++ +  DGK  GYNTD   YV  +  I +G+     +   +GG S  +A +L+ ++                   + +ANRT  R    +  +    LS A+  L+ F+     I+ NTT  GM    D   I  + L  + LV D VY P  T +L EAE+ G  I +GL+MF+ Q  E ++ +T L
Sbjct:   53 SEKSIDGFNVTIPHKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRPT----------------LTVANRTMSRFNNWSLNINKINLSHAESHLDEFD-----IIINTTPAGMNGNTDSV-ISLNRLASHTLVSDIVYNPYKTPILIEAEQRGNPIYNGLDMFVHQGAESFKIWTNL 253          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_STAEQ (Shikimate dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=aroE PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.549e-21
Identity = 74/225 (32.89%), Postives = 111/225 (49.33%), Query Frame = -2
Query:  205 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTD---YVGAISAIEDGLRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLAD--LENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGL 855
            S     GF+ TIPHKE  +   D+++  AKS+GAVN ++ +  DGK  GYNTD   YV  +  I +G+     +   +GG S  +A +L+ ++                   + +ANRT  R    +  +    LS A+  L+ F+     I+ NTT  GM    D   I  + L  + LV D VY P  T +L EAE+ G  I +GL+MF+ Q  E ++ +T L
Sbjct:   50 SEKSIDGFNVTIPHKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRPT----------------LTVANRTMSRFNNWSLNINKINLSHAESHLDEFD-----IIINTTPAGMNGNTDSV-ISLNRLASHTLVSDIVYNPYKTPILIEAEQRGNPIYNGLDMFVHQGAESFKIWTNL 250          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_BACSK (Shikimate dehydrogenase OS=Bacillus clausii (strain KSM-K16) GN=aroE PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.023e-21
Identity = 68/233 (29.18%), Postives = 114/233 (48.93%), Query Frame = -2
Query:  172 QTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGM--ILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIM 864
            +T  +    GF+ TIPHK A +   DE+D  A+++GAVN ++ +  DG+  G NTD  G I ++   +  +         +L G+  +VI                 A + ++NRT ++A+ELA+      +    L       G   +L NTTS+GM P   + PI    L    +V D +Y P  T LL+EA++ G  I++G+ MF+ Q     E +TG    ++  ++++
Sbjct:   49 RTMKAQGIDGFNVTIPHKVAIIDYLDEIDEDAEAMGAVNTVVCQ--DGRWVGKNTDADGYIESLLPVVSDQ---------SLTGRRVLVIGAGGAARAVIHALGKQRATISVSNRTAEKAQELAQLFSHLTIEAIPLNEAESTLGTYDVLINTTSVGMYPDTSKQPIALDRLKQATIVSDLIYNPYETALLQEAKQRGNRILNGIGMFVNQGALSIEHWTGRKPNRKCMERVV 270          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_NATPD (Shikimate dehydrogenase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=aroE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.642e-21
Identity = 85/221 (38.46%), Postives = 105/221 (47.51%), Query Frame = -2
Query:  190 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE--DGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVG---GHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKE 837
            G + TIP KE  +    E D +A+ IGAVN I     +G+  G+NTD  G I A +  D  R    V  G   A     F +                    V IANRT  RA  LA  V    GH L   +L    P D  +L N TS+GM+   DETP+PK  L     V DAVY P  TRLLREA+ +GAT + G  M + Q  E +E +TG  AP E
Sbjct:   57 GLNVTIPFKEDVLDVV-EPDPLAERIGAVNTI---DFEGEPTGHNTDAAGVIRAFQHHDVERSGTAVVVGAGGAGRAAAFALADEGM--------------EVHIANRTVSRATALATEVPDATGHGLD--ELAELVP-DADVLVNATSVGME--ADETPVPKRHLHEGLAVLDAVYAPLETRLLREADAAGATTIDGAWMLLFQGVEAFEIWTGKAAPVE 254          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_ALKOO (Shikimate dehydrogenase OS=Alkaliphilus oremlandii (strain OhILAs) GN=aroE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.642e-21
Identity = 75/239 (31.38%), Postives = 122/239 (51.05%), Query Frame = -2
Query:  172 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED-GLRGRLNV-----SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHA----LSLADLENFN----PEDGMILANTTSIGMQPKVDETPIPKH-ALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIM 843
            F GF+ T+PHK   +   DEV   AK IGAVN ++ +  +GKL G+NTD  G + ++ED G+  +        +GG + ++A +L +                    ++ I NRT D+A ++A+ +G       + +  LEN       E+  +L NTTS+GM    +E+ I +   L    +V D +Y P  T+LL++AE  G   ++GL M IGQA   +E +T +  P +  +K +
Sbjct:   63 FRGFNVTMPHKREVMNYLDEVSENAKIIGAVNTVVNQ--NGKLVGHNTDGKGYVQSLEDEGIYVKEKTFVIAGAGGAARSVAVQLAL----------------DGAKKITILNRTIDKAHDIAQLIGMSIPNVHIEINCLENKTLAKAVEEADVLINTTSLGMYSMEEESIIGEEKVLPSNLVVSDLIYNPAKTKLLQQAESRGCKTINGLGMLIGQAAIAFELWTEVAMPIDYIKKTL 283          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_METST (Shikimate dehydrogenase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=aroE PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.451e-21
Identity = 79/239 (33.05%), Postives = 114/239 (47.70%), Query Frame = -2
Query:  163 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED--GLRGRLNV----SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHA-LSLADLENFNPEDGMI-----LANTTSIGMQPKVDET--PIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIMAKY 837
            G + TIPHK   +   DE+D  A+ IGAVN I     DG   GYNTD +GAI +IE    L+ + N+    +GG S A+   L                      ++++ANR+ D A++L   +         D  N    D +I     + NTT IGM PK DE   PI    +     V D +Y P  T+LL+++++ GAT + G  M I Q  + +E FTG     E F+K + K+
Sbjct:   62 GLNVTIPHKTTIIPYLDEIDETAEKIGAVNTI--NFKDGIAKGYNTDGIGAIVSIEKYTSLKDK-NIMIIGAGGASKAITFTLL----------------NKNINQLIVANRSKDNAQKLITNLKNQTNFENIDFINIKKTDNVIDDVDIIINTTPIGMYPK-DEVAPPIKTDKISSKHTVMDIIYNPLETQLLKQSKKQGATTIPGTHMLINQGIKAFEIFTGKTPSYESFEKPLLKH 280          
The following BLAST results are available for this feature:
BLAST of CN191732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
AROE_BACCN4.815e-2334.53Shikimate dehydrogenase OS=Bacillus cereus subsp. ... [more]
AROE_METAC8.214e-2335.04Shikimate dehydrogenase OS=Methanosarcina acetivor... [more]
AROE_THETN2.390e-2231.98Shikimate dehydrogenase OS=Thermoanaerobacter teng... [more]
AROE_EXIS29.081e-2232.20Shikimate dehydrogenase OS=Exiguobacterium sibiric... [more]
AROE_STAES1.549e-2132.89Shikimate dehydrogenase OS=Staphylococcus epidermi... [more]
AROE_STAEQ1.549e-2132.89Shikimate dehydrogenase OS=Staphylococcus epidermi... [more]
AROE_BACSK2.023e-2129.18Shikimate dehydrogenase OS=Bacillus clausii (strai... [more]
AROE_NATPD2.642e-2138.46Shikimate dehydrogenase OS=Natronomonas pharaonis ... [more]
AROE_ALKOO2.642e-2131.38Shikimate dehydrogenase OS=Alkaliphilus oremlandii... [more]
AROE_METST3.451e-2133.05Shikimate dehydrogenase OS=Methanosphaera stadtman... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005L14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191732 ID=CN191732; Name=CN191732; organism=Citrus sinensis; type=EST; length=880bp
CTAAGAAATTTAGGATTTTATTTCCATACATAAANATTGAGGTACAAGTA
GACCTTTTATATTTTTGTCAGAAGAAAAAAATGAACAACGATGCTTCATG
TTGAATTACGCTAGAAAACAAAATCAGCAACATGTAATGGATTGACCAAA
CAGACCACACTAGTACTTTGCCATGATTTTCTGAAATAGTTCCTTCGGCG
CAGGCAATCCAGTGAATCTTTCATACTGTTCATATGCCTGTCCAATGAAC
ATCTCCAGCCCTGACACAATTGTGGCTCCAGATTCCTCTGCTTCTCTCAA
GAGTCTGGTAATTTTCGGGGTGTAAACAGCATCAAAGACCAGCGCATAAT
GTCCCAAAGCATGCTTCGGAATAGGTGTTTCATCAACTTTTGGCTGCATT
CCAATGGACGTTGTGTTTGCAAGAATCATGCCATCCTCCGGATTAAAATT
TTCCAGGTCGGCAAGAGATAAAGCATGTCCTCCTACAGTCTCTGCAAGTT
CTCTGGCTCGATCATAAGTGCGATTGGCAATCACAACCCTTGCTCCCTTT
GCTTTTGCACCATAAGCAAGTGCCTTGCCAGCACCACCAGCTCCAATGAC
CACAAATAACTTACCTGCTAATGCTGAGCTGACCCCACCACTGACATTAA
GTCTACCTCTTAGTCCATCCTCAATAGCAGAAATAGCACCAACATAGTCT
GTATTGTAACCAAATAACTTCCCATCACTTTGTCTTCTTATGATACAATT
AACAGCTCCTATTGACTTGGCAACTGTATCAACCTCATCACAACACTTCA
CTGCTGCCTCTTTGTGAGGAATTGTGCAACTGAATCCGGCAAAATCGTTG
GACGAATAAGTCTGGAAAAATTTTGCAATG
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