CN191732

Overview
NameCN191732
Unique NameCN191732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_METTH (Shikimate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=aroE PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.713e-20
Identity = 73/235 (31.06%), Postives = 113/235 (48.09%), Query Frame = -2
Query:  166 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETV----------GGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVF-DAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIMAK 837
            G + TIPHKEA ++  D++   A  IGAVN +  +  DG + GYNTD  G + A+E+           V+S     + ++                  + + I NRT ++AR LAE +          GG+ L    +++ +     IL +TT +GM P  D+ P+    L H  LV  D VY P+ T LLREAE + A  VSG+ M + Q  E +  +TG   P ++ +  + +
Sbjct:   62 GVNVTIPHKEAVLEYIDDIHGTAALIGAVNTL--KFDDGTVRGYNTDASGCLRALEE-----------VTSVEGSSVLILGAGGAARACAFQLAEKGASDITILNRTPEKARLLAEDMADKLGFEASYGGYELIQGSVKSAD-----ILIDTTPVGMHPHTDDRPLVGAELMHEGLVVHDLVYNPQRTVLLREAERASAIPVSGIRMLLYQGVEAFRIWTGRDPPLDVMEDALKR 278          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_METJA (Shikimate dehydrogenase OS=Methanocaldococcus jannaschii GN=aroE PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 79/227 (34.80%), Postives = 117/227 (51.54%), Query Frame = -2
Query:  205 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRL---NV----SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVG-------GHALSLADLENFNPEDGM-ILANTTSIGMQPKVDETPIPK-HALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGL 837
            GF+ TIPHK   +K  DE+D  A+ IGAVN I  +  DGK  GYNTD +GA  A+E+ + GR+   N+    +GG + A+A +L                       ++IANRT ++A  LA+ +        G  +  + L+     DG+ I+ N T IGM P +D  PI K   L    +V D +Y P  T LL+EA++  A  ++GL M I Q    ++ +TG+
Sbjct:   62 GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTI--KIEDGKAIGYNTDGIGARMALEEEI-GRVKDKNIVIYGAGGAARAVAFEL------------------AKDNNIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLD--VDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGV 265          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_HALMA (Shikimate dehydrogenase OS=Haloarcula marismortui GN=aroE PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 86/223 (38.57%), Postives = 112/223 (50.22%), Query Frame = -2
Query:  196 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED---GLRGRLNV--SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETV---GGHAL-SLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAP 837
            G + TIP K+  +   D    +A+ IGAVN +    + G   GYNTD VGA+ A++     L G   V  +GG   A+A  L                       V IANRT  +A  LA+ V    GH L SL+DL      +  IL N TS+GM+   D+TP+P  AL     V DAVYTP  TRLL++A  +GAT V G  M + Q  E +ER+TG  AP
Sbjct:   57 GLNVTIPFKQDVLDAVDPAP-LAERIGAVNTV--DFTGGTPTGYNTDAVGAVRALDHHDVSLSGTAVVVGAGGAGRAVAFGL-----------------ADEGLSVRIANRTESKADALADEVPDASGHGLDSLSDLL----ANADILVNCTSVGMEE--DKTPVPADALHSDLAVLDAVYTPIETRLLQDAAAAGATTVDGAWMLLYQGVEAFERWTGEDAP 253          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_PYRFU (Shikimate dehydrogenase OS=Pyrococcus furiosus GN=aroE PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.815e-20
Identity = 76/229 (33.19%), Postives = 114/229 (49.78%), Query Frame = -2
Query:  175 DFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE-----DGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKI 846
            D  G + T+P+KE  +K  DE+   +++IG+VN ++  +  GKL GY TD +GA  A+E     DG    +  +GG   A+A +L  V                    VV+ NRT ++A+ L E  G    SL  L  +  E   IL N TS+GM    +++ +PK+ L    +V D VY P  T LLR A+E G   + GL M + Q  E +  +TG     EL +++
Sbjct:   58 DIQGVNVTMPYKEEVIKFLDELSEDSQNIGSVNTVVNLE--GKLVGYTTDGIGARRALERFTQVDGANILILGAGGAGKAIAYELSKVA------------------NVVVLNRTIEKAKRL-EKFGIVGDSLEALPYY-VEWADILINATSVGMNE--EKSLVPKNLLRPGLVVMDIVYKPLNTLLLRYAQEKGCIAIDGLWMLVYQGAESFRLWTGEEGDVELMRRV 262          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_HALSA (Shikimate dehydrogenase OS=Halobacterium salinarium GN=aroE PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.815e-20
Identity = 78/215 (36.28%), Postives = 102/215 (47.44%), Query Frame = -2
Query:  196 AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAP 840
            AG + T P K++A       D++A  +GAVN I    S     GYNTD  G   A                 +L+G   VV+                 A V IANRT   A ELA  VGG A+ L DL   +  D  +L + T++GM    D +P+   AL     V DAVY+P  TRLLR+A  +GAT + G  M + Q  E +ER+TGL AP
Sbjct:   56 AGLNVTAPFKQSAASAV-ATDSMAARVGAVNTI--DFSGAAPRGYNTDVAGVKRAFAHH-----------DVSLSGAQAVVVGAGGAGRAAAFALADAGATVRIANRTRAAADELAADVGGTAVGLGDLPR-SLADATVLVHATTVGMDDP-DTSPVSADALHDDLAVLDAVYSPVETRLLRDAAAAGATTIDGAWMLLYQGAEAFERWTGLDAP 254          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_HALS3 (Shikimate dehydrogenase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=aroE PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.815e-20
Identity = 78/215 (36.28%), Postives = 102/215 (47.44%), Query Frame = -2
Query:  196 AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAP 840
            AG + T P K++A       D++A  +GAVN I    S     GYNTD  G   A                 +L+G   VV+                 A V IANRT   A ELA  VGG A+ L DL   +  D  +L + T++GM    D +P+   AL     V DAVY+P  TRLLR+A  +GAT + G  M + Q  E +ER+TGL AP
Sbjct:   56 AGLNVTAPFKQSAASAV-ATDSMAARVGAVNTI--DFSGAAPRGYNTDVAGVKRAFAHH-----------DVSLSGAQAVVVGAGGAGRAAAFALADAGATVRIANRTRAAADELAADVGGTAVGLGDLPR-SLADATVLVHATTVGMDDP-DTSPVSADALHDDLAVLDAVYSPVETRLLRDAAAAGATTIDGAWMLLYQGAEAFERWTGLDAP 254          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_STAHJ (Shikimate dehydrogenase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=aroE PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.983e-20
Identity = 71/220 (32.27%), Postives = 108/220 (49.09%), Query Frame = -2
Query:  208 NDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV------SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 849
            N   GF+ TIPHKE  +   DE++  AK++GAVN +  +  + K  GYNTD +G +  ++       N       +GG S  +A +L  ++                  ++ IANRT  R       +  +A+SL   E +  E  +I+ NTTS G+    D+  I    L    LV D +Y P  T+ L+EAE  G T+ +GL+MFI Q  E ++ +TG
Sbjct:   52 NHINGFNVTIPHKERIIPYLDEINDQAKAVGAVNTV--KIINNKWIGYNTDGIGYVMGLKQVYPDLENAYVLILGAGGASKGIANELSKIVQP----------------KLTIANRTMSRFETWDMDI--NAISLEQSEQYLDEFDIII-NTTSAGLNNN-DDIVISLDNLSSSTLVSDIIYIPYKTKFLKEAEFKGNTVYNGLDMFINQGAESFKIWTG 249          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_CARHZ (Shikimate dehydrogenase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=aroE PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.983e-20
Identity = 72/235 (30.64%), Postives = 118/235 (50.21%), Query Frame = -2
Query:  178 DFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED------GLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGG-----HALSLADLENFNPEDGMILANTTSIGMQPKVDETP-IPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQK 846
            +F G + TIP+KE      DEV T AK+IGAVN I+  +  G+L GYNTD  G + ++++      G +  L  +GG + A+A  L                     A ++IANRT D+A+ELA+   G       L L D +  +     +  NT  +GM P  ++ P +    +    + +D +Y P  T+ L+ ++E GA  ++GL M + Q    +E++TG+  P ++ +K
Sbjct:   60 NFRGINVTIPYKEKVFPFLDEVATEAKTIGAVNTIVHDR--GRLIGYNTDAPGFLLSLKENDVEVTGKKVLLLGAGGAARAVAYALLTA-----------------GAELIIANRTIDKAKELAKDFQGVGKISEILELGD-KPISLAPYHMAVNTLPLGMHPYENQMPAVDFTGVTSDFVAYDLIYNPAETKFLKASKEKGARTINGLSMLLWQGVLAFEKWTGVSPPVKVMKK 274          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_CLOP1 (Shikimate dehydrogenase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=aroE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.500e-20
Identity = 65/227 (28.63%), Postives = 108/227 (47.58%), Query Frame = -2
Query:  157 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIMAKY*C 837
            G + TIP+KE  +   D +   AK+IGAVN I+ +  DGK +GYNTDY G    +E   R ++N+ G          FV+                   ++V+ +R  ++A +  +    + +S  +LE  N E  +I  NTT  GM P ++   + +  +  + +  D VY P  T+ L+ A+++G   V GL M +GQ  +  E + G+   K   + I  +  C
Sbjct:   57 GANVTIPYKEKVMDQLDIISHEAKAIGAVNTILIK--DGKSYGYNTDYYGFGKMLE---RAKVNIEGN-------SFFVLGAGGAARSILKYLEDSKAKKIVLVSRDREKAFKKFKDFNINFMSYGELEEINEEFALI--NTTPCGMYPNINSVAVSEKVIKKFKVAVDIVYNPLETKFLKMAKDNGLKTVDGLFMLVGQGVKAEEIWNGIKVDKSTEEDIYEELKC 269          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_ANATD (Shikimate dehydrogenase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=aroE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.500e-20
Identity = 73/218 (33.49%), Postives = 110/218 (50.46%), Query Frame = -2
Query:  229 DFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRG------RLNV--SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGM--ILANTTSIGMQPKVDETPIP--KHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYE 846
            D  GF+ TIP+KE  ++ CDEV    + I A N +  ++ DGKL  YNTD++G   ++ED  RG      ++ V  SGG + A    L+ +                    V +ANRTY++A +L E V    L +  +E     +    I+ NTTS+GM P ++ +P     +  G    V+D +Y P  T  L+EAE+ G  I +GL+M + QA E
Sbjct:   56 DVVGFNITIPYKEDILEFCDEVSEDVRIIKAANTV--KKEDGKLLAYNTDWIGFKRSLED--RGVDVKDKKILVLGSGGAAKACIYGLYRM----------------GAKEVFVANRTYEKAEKLKE-VFQDILKILPVEWLRRYEFKYDIIINTTSVGMFPNIESSPFDFENYVAGVPVFVYDMIYNPLKTAFLKEAEKKGIKIENGLKMLVYQAIE 252          
The following BLAST results are available for this feature:
BLAST of CN191732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
AROE_METTH1.713e-2031.06Shikimate dehydrogenase OS=Methanobacterium thermo... [more]
AROE_METJA2.237e-2034.80Shikimate dehydrogenase OS=Methanocaldococcus jann... [more]
AROE_HALMA2.237e-2038.57Shikimate dehydrogenase OS=Haloarcula marismortui ... [more]
AROE_PYRFU3.815e-2033.19Shikimate dehydrogenase OS=Pyrococcus furiosus GN=... [more]
AROE_HALSA3.815e-2036.28Shikimate dehydrogenase OS=Halobacterium salinariu... [more]
AROE_HALS33.815e-2036.28Shikimate dehydrogenase OS=Halobacterium salinarum... [more]
AROE_STAHJ4.983e-2032.27Shikimate dehydrogenase OS=Staphylococcus haemolyt... [more]
AROE_CARHZ4.983e-2030.64Shikimate dehydrogenase OS=Carboxydothermus hydrog... [more]
AROE_CLOP18.500e-2028.63Shikimate dehydrogenase OS=Clostridium perfringens... [more]
AROE_ANATD8.500e-2033.49Shikimate dehydrogenase OS=Anaerocellum thermophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005L14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191732 ID=CN191732; Name=CN191732; organism=Citrus sinensis; type=EST; length=880bp
CTAAGAAATTTAGGATTTTATTTCCATACATAAANATTGAGGTACAAGTA
GACCTTTTATATTTTTGTCAGAAGAAAAAAATGAACAACGATGCTTCATG
TTGAATTACGCTAGAAAACAAAATCAGCAACATGTAATGGATTGACCAAA
CAGACCACACTAGTACTTTGCCATGATTTTCTGAAATAGTTCCTTCGGCG
CAGGCAATCCAGTGAATCTTTCATACTGTTCATATGCCTGTCCAATGAAC
ATCTCCAGCCCTGACACAATTGTGGCTCCAGATTCCTCTGCTTCTCTCAA
GAGTCTGGTAATTTTCGGGGTGTAAACAGCATCAAAGACCAGCGCATAAT
GTCCCAAAGCATGCTTCGGAATAGGTGTTTCATCAACTTTTGGCTGCATT
CCAATGGACGTTGTGTTTGCAAGAATCATGCCATCCTCCGGATTAAAATT
TTCCAGGTCGGCAAGAGATAAAGCATGTCCTCCTACAGTCTCTGCAAGTT
CTCTGGCTCGATCATAAGTGCGATTGGCAATCACAACCCTTGCTCCCTTT
GCTTTTGCACCATAAGCAAGTGCCTTGCCAGCACCACCAGCTCCAATGAC
CACAAATAACTTACCTGCTAATGCTGAGCTGACCCCACCACTGACATTAA
GTCTACCTCTTAGTCCATCCTCAATAGCAGAAATAGCACCAACATAGTCT
GTATTGTAACCAAATAACTTCCCATCACTTTGTCTTCTTATGATACAATT
AACAGCTCCTATTGACTTGGCAACTGTATCAACCTCATCACAACACTTCA
CTGCTGCCTCTTTGTGAGGAATTGTGCAACTGAATCCGGCAAAATCGTTG
GACGAATAAGTCTGGAAAAATTTTGCAATG
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