CN191732

Overview
NameCN191732
Unique NameCN191732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_METMP (Shikimate dehydrogenase OS=Methanococcus maripaludis GN=aroE PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.110e-19
Identity = 71/226 (31.42%), Postives = 115/226 (50.88%), Query Frame = -2
Query:  205 DFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED--GLRGRLNV----SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVG-----GHALSLADLENFNPEDGMILANTTSIGMQPKVDETP-IPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGL 846
            +F GF+ TIPHK   +K  DE+D  A++IGAVN +  +  +GK  GYNTD +G   A+E+  G+    N+    SGG S A++ +L                       + I NR  ++A  L++ +       + L+   L+  N E+  I+ NTT +GM P  +  P IP + +   A+V D +Y P     L+EA++ GA  ++G+ M + Q    +E +TG+
Sbjct:   59 NFRGFNITIPHKMNIMKYLDEIDCDAEAIGAVNTV--KIENGKAIGYNTDGIGVKKALEEKTGILINKNILIIGSGGASRAVSFEL------------------AKDNNLTIVNRNIEKAENLSKEISRKLKKENPLNYGGLD-INIENFDIIINTTPVGMYPHTEVEPVIPLNNIKKDAVVMDLIYNPLEPVFLKEAKKYGAKTINGIGMLVYQGAVSFEIWTGI 263          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_SILST (Shikimate dehydrogenase OS=Silicibacter sp. (strain TM1040) GN=aroE PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.450e-19
Identity = 73/221 (33.03%), Postives = 108/221 (48.87%), Query Frame = -2
Query:  208 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGL------RGRLNV--SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNP-EDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 843
            F G + TIPHK++ ++  D+V   AK +GA N +I  + DG +   NTD  G I+ + +G        G   V  +GG S A+   L                       + + NRT  RA+E+A+T G    ++  +E  N  ED  ++ NTTS+GM  +     +P   L    +V D VY P  T LL+ AEE+G T+V GL M + QA   +ER+ G
Sbjct:   60 FVGANVTIPHKQSIMEIADKVTDRAKLMGAANTLIFHE-DGAIVADNTDGYGFITNLHEGAPDWDAKSGPATVFGAGGASRAVIASLIEA----------------GVPEIRLTNRTRSRAKEVAQTFGSKVTAVDWVEAGNVIEDASLVVNTTSLGMTGQ-RRLRVPLDGLHSGIVVTDLVYNPLKTELLQAAEEAGCTVVDGLGMLLHQAVPGFERWFG 262          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_METM6 (Shikimate dehydrogenase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=aroE PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.450e-19
Identity = 75/228 (32.89%), Postives = 115/228 (50.44%), Query Frame = -2
Query:  208 AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED--GLRGRLNV----SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAE----------TVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETP-IPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 840
            AGF+ TIPHK   +K  DE+D  AKSIGAVN +  +  +GK  GYNTD +G   A+E+  G+    N+    SGG S A++ +L                       + I NR  ++A+ L+E          ++   AL++ D++NF+     I+ NTT +GM P  D  P IP + +   A+V D +Y P     L+EA + G   ++GL M + Q    ++ +TG
Sbjct:   61 AGFNVTIPHKINIMKYLDEIDEDAKSIGAVNTV--KIENGKTIGYNTDGIGVKRALEEKSGILINKNILIIGSGGASRAVSFEL------------------AKENNLTIVNRNIEKAKILSEELSTKLKKENSIKYGALNI-DIKNFD-----IIINTTPVGMYPDTDVNPVIPLNDIKKSAVVMDLIYNPLEPVFLKEAMKYGVETINGLGMLVYQGAVSFQIWTG 262          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_SINMW (Shikimate dehydrogenase OS=Sinorhizobium medicae (strain WSM419) GN=aroE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.894e-19
Identity = 78/230 (33.91%), Postives = 111/230 (48.26%), Query Frame = -2
Query:  172 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGG--HALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPK---HALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGL-PAPKELFQKIM 843
            F G + TIPHKEAA +  D  D ++  +GA N +     +G +   NTD  G ++ +++  +G   +S  V     G    VI                   + + NRT +RARELA+  G   HA S+A L       G+ + NTTS+GM    D  P P      L   A+V D VY P  T LLR+AEE G  +V GL M + QA   +E++ GL P   E  ++I+
Sbjct:   65 FCGGNVTIPHKEAAFRLSDRPDELSAELGAANTLWLE--NGTIRATNTDGRGFVANLDERAKGWDRISAAVILGAGGASRAVIQAIRDRGVKA---------IHVVNRTPERARELADRFGSAVHAHSMAALPEVLSGAGLFV-NTTSLGM----DGEPAPAIDFSKLARDAVVTDIVYVPLKTPLLRQAEEQGFRVVDGLGMLLHQAAPGFEKWFGLRPVVDEALREII 278          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_DEHSC (Shikimate dehydrogenase OS=Dehalococcoides sp. (strain CBDB1) GN=aroE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.894e-19
Identity = 75/232 (32.33%), Postives = 109/232 (46.98%), Query Frame = -2
Query:  178 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG----LRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETV--------GGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQK 837
            G + TIPHK   +K  D +D  AK IGAVN I+    +G+L GYNTD+ G +  +E       + R  + G   SA A  L +                     + +  R  ++A++LA  +         G  L+ A+LE    E  +I+ N T IGM     ++ IP   L     V DA+Y P  TRLL +AE+ GA I++GLEM + Q    +E +T   AP  +  K
Sbjct:   62 GLNVTIPHKIEVIKYIDTLDPAAKKIGAVNTIVNE--NGQLKGYNTDFGGFVRLLEHNRIAPAKHRFALLGAGGSAHAISLAICTLGG---------------HLTVLARQEEKAKDLAAKMCLRFKGKAQGLELNEANLEETLAESDIIV-NCTPIGMGNLAGQSLIPPRLLRPDLTVIDAIYNPCKTRLLEDAEKKGAKIINGLEMLVWQGAMSFEIWTSQKAPFRVMMK 275          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_SALRD (Shikimate dehydrogenase OS=Salinibacter ruber (strain DSM 13855) GN=aroE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 76/230 (33.04%), Postives = 110/230 (47.83%), Query Frame = -2
Query:  202 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE----DGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGH----ALSLADLEN--FNPEDGMILANTTSIGMQP-KVDETPIPK---HALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFT--GLP 843
            F G + T PHKEA +   DEV   A+++GAVN I+R    G+L G NTD  G +  +E    D L G   +  G   A    ++ ++                  R+ I  R  D+A  LA  +  H    AL ++  E    +     ++ N T +GM P +  +TP P        H  +V+D VYTP+ TRLLREA   GAT + GL+M + QA   Y ++T  G+P
Sbjct:   61 FLGANVTTPHKEAVLPVLDEVTERARAVGAVNTIVR--DGGRLHGDNTDIAGFLRPLEERGGDALEGAPMLVFGAGGAARAVVYGLLSHYRPE------------RLTIVARRPDQAEGLAADLAAHDPDGALRVSSFEEAALSVRTSRLVVNATPLGMAPDRRGQTPWPNPVDFTADH--VVYDLVYTPEETRLLREAAAEGATPIGGLDMLVEQAAAAYRQWTDRGMP 274          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_CLOPE (Shikimate dehydrogenase OS=Clostridium perfringens GN=aroE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 65/227 (28.63%), Postives = 107/227 (47.14%), Query Frame = -2
Query:  157 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIMAKY*C 837
            G + TIP+KE  +   D +   AK IGAVN I+ +  DGK +GYNTDY G    +E   R ++N+ G          FV+                   ++V+ +R  ++A +  +    + +S  +LE  N E  +I  NTT  GM P  +   + +  +  + +  D VY P  T+ L+ A+++G   V GL M +GQ  +  E + G+   K   ++I  +  C
Sbjct:   57 GANVTIPYKEKVMDQLDIISHEAKVIGAVNTILIK--DGKSYGYNTDYYGFGKMLE---RAKVNIEGN-------SFFVLGAGGAARSILKYLEDSKAKKIVLVSRDKEKAFKKFKDFNINFMSYGELEEINEEFALI--NTTPCGMYPNTNSVAVSEKVIKKFKVAVDIVYNPLETKFLKMAKDNGLKTVDGLFMLVGQGVKAEEIWNGIKVDKSTEEEIYEELKC 269          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_DEHE1 (Shikimate dehydrogenase OS=Dehalococcoides ethenogenes (strain 195) GN=aroE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.230e-19
Identity = 73/234 (31.20%), Postives = 110/234 (47.01%), Query Frame = -2
Query:  178 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG----LRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLA------DLENFNPEDGM----ILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQK 837
            G + TIPHK   +K  D +D  A+ IGAVN I+    +G+L GYNTD+ G +  +E       + R  + G   SA A  L V                     + +  R  ++A++LA   G   L L+      +L + N E+ +    ++ N T +GM     ++ +P   L     V DA+Y P  TRLL +AE+ GA I++GLEM + Q    +E +T   AP  L  K
Sbjct:   62 GLNVTIPHKIEVIKYIDSLDPAAEKIGAVNTIVNE--NGRLKGYNTDFGGFVRLLEHNRIAPAKQRFTLLGAGGSAHAIALAVC---------------NLGGHLTVLARQEEKAKDLA---GKMCLRLSGKTQGLELNDTNLEEALADTDVIVNCTPVGMGNLAGQSLVPPRLLRPDLTVIDAIYNPCKTRLLEDAEKRGARIINGLEMLVWQGAMSFEIWTNQKAPFRLMMK 275          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_RHISN (Shikimate dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=aroE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.218e-19
Identity = 78/233 (33.48%), Postives = 112/233 (48.07%), Query Frame = -2
Query:  166 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGG--HALSLADLENFNPEDGMILANTTSIGMQ----PKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGL-PAPKELFQKIMAK 843
            F G + TIPHKE A +  D  D ++  +GA N +     DG++   NTD  G ++ +++   G   +S  V     G    VI                   + + NRT  RA+ELA+  G   HA  +A L       G+ + NTTS+GM     P +D +P     L + A+V D VY P  T LLR+AEE G  IV GL M + QA   +E++ GL P   E  ++I+ K
Sbjct:   65 FCGGNVTIPHKEMAFELSDRPDELSAELGAANTLWLE--DGRICATNTDGRGFVANLDERASGWDRISTAVILGAGGASRAVIQAVRDRGVKT---------IHVVNRTAARAQELADRFGRAVHAHPIAALSEVMAGAGLFV-NTTSLGMDGEPAPAIDFSP-----LANGAVVTDIVYVPLKTPLLRQAEEQGYRIVDGLGMLLHQAAPGFEKWFGLRPVVDETLRQIIIK 280          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_PYRKO (Shikimate dehydrogenase OS=Pyrococcus kodakaraensis GN=aroE PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 74/226 (32.74%), Postives = 109/226 (48.23%), Query Frame = -2
Query:  181 AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE-----DGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAET-VGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQ 840
            +G + T+PHKEA +   D +   +  IG+VN ++ R+  G+L G+ TD +GA  A+E      G R  +  +GG   A+A +L                       VV+ NRT ++A+ L    + G AL+  +L  +  E   +L N TS+GM     ETP+P   L    +V D VY P  TRLL EAE  G   V GL M + Q  E +  +TG    + L +
Sbjct:   61 SGLNVTMPHKEAVIHFLDSLSEDSGEIGSVNTVVNRK--GRLEGHTTDGLGARRALERAIELGGRRILIIGAGGAGKAIAYEL------------------SRDNEVVVLNRTPEKAKALERFGITGDALNRENLGEYL-EWAEVLINATSVGMNSW--ETPVPAELLRRDLVVMDIVYKPLKTRLLTEAELRGCKTVDGLWMLVYQGIESFRLWTGFKPDEGLMR 263          
The following BLAST results are available for this feature:
BLAST of CN191732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
AROE_METMP1.110e-1931.42Shikimate dehydrogenase OS=Methanococcus maripalud... [more]
AROE_SILST1.450e-1933.03Shikimate dehydrogenase OS=Silicibacter sp. (strai... [more]
AROE_METM61.450e-1932.89Shikimate dehydrogenase OS=Methanococcus maripalud... [more]
AROE_SINMW1.894e-1933.91Shikimate dehydrogenase OS=Sinorhizobium medicae (... [more]
AROE_DEHSC1.894e-1932.33Shikimate dehydrogenase OS=Dehalococcoides sp. (st... [more]
AROE_SALRD2.473e-1933.04Shikimate dehydrogenase OS=Salinibacter ruber (str... [more]
AROE_CLOPE2.473e-1928.63Shikimate dehydrogenase OS=Clostridium perfringens... [more]
AROE_DEHE13.230e-1931.20Shikimate dehydrogenase OS=Dehalococcoides ethenog... [more]
AROE_RHISN4.218e-1933.48Shikimate dehydrogenase OS=Rhizobium sp. (strain N... [more]
AROE_PYRKO5.509e-1932.74Shikimate dehydrogenase OS=Pyrococcus kodakaraensi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005L14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191732 ID=CN191732; Name=CN191732; organism=Citrus sinensis; type=EST; length=880bp
CTAAGAAATTTAGGATTTTATTTCCATACATAAANATTGAGGTACAAGTA
GACCTTTTATATTTTTGTCAGAAGAAAAAAATGAACAACGATGCTTCATG
TTGAATTACGCTAGAAAACAAAATCAGCAACATGTAATGGATTGACCAAA
CAGACCACACTAGTACTTTGCCATGATTTTCTGAAATAGTTCCTTCGGCG
CAGGCAATCCAGTGAATCTTTCATACTGTTCATATGCCTGTCCAATGAAC
ATCTCCAGCCCTGACACAATTGTGGCTCCAGATTCCTCTGCTTCTCTCAA
GAGTCTGGTAATTTTCGGGGTGTAAACAGCATCAAAGACCAGCGCATAAT
GTCCCAAAGCATGCTTCGGAATAGGTGTTTCATCAACTTTTGGCTGCATT
CCAATGGACGTTGTGTTTGCAAGAATCATGCCATCCTCCGGATTAAAATT
TTCCAGGTCGGCAAGAGATAAAGCATGTCCTCCTACAGTCTCTGCAAGTT
CTCTGGCTCGATCATAAGTGCGATTGGCAATCACAACCCTTGCTCCCTTT
GCTTTTGCACCATAAGCAAGTGCCTTGCCAGCACCACCAGCTCCAATGAC
CACAAATAACTTACCTGCTAATGCTGAGCTGACCCCACCACTGACATTAA
GTCTACCTCTTAGTCCATCCTCAATAGCAGAAATAGCACCAACATAGTCT
GTATTGTAACCAAATAACTTCCCATCACTTTGTCTTCTTATGATACAATT
AACAGCTCCTATTGACTTGGCAACTGTATCAACCTCATCACAACACTTCA
CTGCTGCCTCTTTGTGAGGAATTGTGCAACTGAATCCGGCAAAATCGTTG
GACGAATAAGTCTGGAAAAATTTTGCAATG
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