CN191732

Overview
NameCN191732
Unique NameCN191732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_DESRM (Shikimate dehydrogenase OS=Desulfotomaculum reducens (strain MI-1) GN=aroE PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 70/244 (28.69%), Postives = 118/244 (48.36%), Query Frame = -2
Query:  166 SNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR----GRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPE-------DGMILANTTSIGMQPKVDETP-IPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIMAK 852
            S + AG + T+PHK+  +   DE++  A+ IGAVN I+   ++GKL GYNTD  G + A+ +  R    G+  +   +GG + A+A +L +                     + I NR  ++A ELA  +     + A +  +          +  ++   T +GM P+VD+ P  P   L    LV D +Y P+ T  LR A+  G+  ++GL M + Q    +E +TG  AP ++ + ++ K
Sbjct:   61 SLNMAGVNVTVPHKQRVMPFLDELEPAARIIGAVNTIVN--NNGKLVGYNTDGKGFVRALTEEARFNPLGKSAILIGAGGAARAVAVQLAL----------------SGLRTIYITNRNQEKAEELARDILESTDTSASMIPWGNNLLGKRMVEVDLVVQATPLGMSPEVDQVPEFPFQMLTPQHLVCDLIYNPEQTCFLRRAKSRGSKTMNGLAMLLYQGVLAFELWTGFTAPVDVMRNVLHK 286          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_MACCJ (Shikimate dehydrogenase OS=Macrococcus caseolyticus (strain JCSC5402) GN=aroE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.227e-18
Identity = 70/233 (30.04%), Postives = 110/233 (47.21%), Query Frame = -2
Query:  163 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMI-----LANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIMAKY 837
            GF+ TIP+K   ++  D VD  A+ IGA+N +     DG  +GYNTD  G  ++IE    G+  V   +GG S A+   LF                     +V + NR  +R  +    +        D   +   DG+I     + NTT +GM+  + +T I    L   A+V D +YTP  T +L+ A + G ++++GL+MF+ Q    YE +TG  A K   ++ +  Y
Sbjct:   56 GFNITIPYKVDMLQVVDVVDIKAQMIGAINTV--HIEDGIWYGYNTDGAGFKASIEKYTGGKNIVILGAGGASRAICYTLF------------------KDNKVTVLNRNTNRVADWPFQI--------DAYTYEESDGVIQQADIVINTTPVGMEGFMPDTLIDISQLKSSAVVCDIIYTPDKTPILQSAAQRGLSVINGLDMFVNQGALSYEIWTGKKANKAAMKQAVINY 260          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_METBU (Shikimate dehydrogenase OS=Methanococcoides burtonii (strain DSM 6242) GN=aroE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.603e-18
Identity = 75/222 (33.78%), Postives = 111/222 (50.00%), Query Frame = -2
Query:  178 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQK 843
            F G + T+P KE A+K  D  D++A  IGA+N I  +  DG + GYNTD +GA   IED          GV   +  K  +++                 A V IANRT +RA +LA  +G       D+ +   ED  IL NTT++G+    + T +    +     VFD VY P +T+LL+EAE +GA  ++G+ M + Q  E +  +TG   P  + +K
Sbjct:   56 FGGLNLTVPLKETALKFVD-ADSLAAKIGAINTIDFK--DG-IKGYNTDGIGAKRTIEDE---------GVD--IKDKNVLILGAGGAARAIAFTFAEAGANVNIANRTPERAMQLAAEIGDAKGYGLDIVDNGLEDIDILINTTTVGLGNS-NGTLVTAEQMHSDLAVFDIVYNPLMTKLLQEAETAGARPITGIMMLVYQGAEAFRIWTGKEPPINVMKK 261          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_AZOC5 (Shikimate dehydrogenase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=aroE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.603e-18
Identity = 73/230 (31.74%), Postives = 110/230 (47.83%), Query Frame = -2
Query:  205 FFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRG-----RLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLA-DLENFNPEDGMILANTTSIGM--QPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGL 870
            FF  ++   +AG + TIPHKE A     E D VA+++G  N +     DG+LFG NTD  G +S ++    G     R+ +  G   A    L+  +                  +V++ANRT  RA  LA   G   + +  D  + + ++  ++ANTTS+GM  QP +D   +    L   A+V D VY P  T LL+ A+  G   V GL M + QA   + R+ G+
Sbjct:   46 FFARFAEQGYAGGNVTIPHKEVAFNALAEADPVARALGVANTL--WLEDGRLFGANTDAPGFLSNLDVTAPGWDANPRVALVLGAGGASRAVLYGFL-------------QRGFDKVLLANRTLARAEALAAHFGPRVVPIGWDGVSASLKEAQVVANTTSLGMKGQPPLD---LDLSVLADDAVVADVVYVPLETPLLKAAKARGLRTVDGLGMLLHQAVPGFARWFGV 257          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_THET2 (Shikimate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=aroE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 74/218 (33.94%), Postives = 103/218 (47.25%), Query Frame = -2
Query:  205 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGRLNV--SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGL 843
            F G + T+P KEAA+   D V   A+ IGAVN ++  Q +G+LFG+NTD  G + A++ G   L+G   V  +GG   A+A  L                       V + NRT  RA  LAE  G  A+ L         +  +L N T +G++     +P+P   L     V D VY P  TR LREA+E G  + +GL M   Q    +  +TGL
Sbjct:   54 FRGVNLTLPLKEAALAHLDWVSPEAQRIGAVNTVL--QVEGRLFGFNTDAPGFLEALKAGGIPLKGPALVLGAGGAGRAVAFAL-----------------REAGLEVWVWNRTPQRALALAEEFGLRAVPLE-----KAREARLLVNATRVGLEDP-SASPLPAELLPEEGAVVDLVYRPLWTRFLREAQERGLKVQTGLPMLAWQGALAFRLWTGL 246          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_SYMTH (Shikimate dehydrogenase OS=Symbiobacterium thermophilum GN=aroE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 76/234 (32.48%), Postives = 117/234 (50.00%), Query Frame = -2
Query:  181 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED-GLR--GRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSL-ADLENFNPEDGM-------ILANTTSIGMQPKVDETPIPKHAL-GHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQ 837
            G + TIPHKEA +   D+V   A+ +GAVN I+ R   G+L GYNTD  G + ++E+ G+R  GR  V   +GG + A+A  L +                   AR+ I NR+  RA  LA  +      + A++ +   E+         ++ N T +GM+P  + TP+    L   + +V+D VY P  TRLLREA + G   V+GL M + Q    +E + G   P ++ +
Sbjct:   68 GVNVTIPHKEAVMAYLDDVAPTARQVGAVNTIVNR--GGRLIGYNTDGWGFLLSLEERGVRVAGRNAVVLGAGGAARAVALHLGMA----------------GVARLTIINRSRQRAEFLAADLARAKTPVRAEVADPGSEEARAALAEAGLVVNCTPLGMEPDTESTPLEDVGLLPAHCVVYDTVYRPLETRLLREARQHGLITVNGLAMLVHQGACAWEYWFGRRGPVDVMR 283          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_DEHSB (Shikimate dehydrogenase OS=Dehalococcoides sp. (strain BAV1) GN=aroE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.734e-18
Identity = 73/232 (31.47%), Postives = 108/232 (46.55%), Query Frame = -2
Query:  178 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG----LRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETV--------GGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQK 837
            G + TIPHK   +K  D +D  AK IGAVN I+    +G++ GYNTD+ G +  +E       + R  + G   SA A  L +                     + +  R  ++A++LA  +         G  L+ A+LE    E  +I+ N T IGM     ++ I    L     V DA+Y P  TRLL +AE+ GA I++GLEM + Q    +E +T   AP  +  K
Sbjct:   62 GLNVTIPHKIEVIKYIDTLDPAAKKIGAVNTIVNE--NGQMKGYNTDFGGFVRLLEHNRIAPAKHRFALLGAGGSAHAISLAICTLGG---------------HLTVLARQEEKAKDLAAKMCLRFKGKAQGLELNEANLEETLAESDIIV-NCTPIGMGNLAGQSLISPRLLRPDLTVIDAIYNPCKTRLLEDAEKKGAKIINGLEMLVWQGAMSFEIWTSQKAPFRVMMK 275          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_BACSU (Shikimate dehydrogenase OS=Bacillus subtilis GN=aroD PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.734e-18
Identity = 68/217 (31.34%), Postives = 104/217 (47.93%), Query Frame = -2
Query:  208 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTD---YVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGG----HALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 837
            G + T+PHK + +   D +D  AK +GAVN + RR+ D KL GYNTD   +V ++  + D     L+     +   A  +F  I                  +  I NRT ++A+ L E          LS+ + E    E   ++ +TTS+GM P VD+ P+        A+V D VY P  T LL+EA + G   + G+ MF+ QA   ++ +TG
Sbjct:   58 GINVTVPHKVSIMDYLDHIDESAKVLGAVNTV-RREGD-KLVGYNTDGEGFVKSLMKVLDKPISELSFLMIGAGGAARAIFTTIVRNTPK------------KFDICNRTLEKAKRLTEATPSFHNKEVLSIKEAEE-RLEQYDVIIHTTSVGMYPNVDDVPLSLQRAASSAVVCDIVYNPIQTALLKEASQKGLKTLDGVGMFVEQAALSFQLWTG 259          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_STAS1 (Shikimate dehydrogenase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=aroE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.571e-18
Identity = 76/235 (32.34%), Postives = 110/235 (46.81%), Query Frame = -2
Query:  163 AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAI-------EDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLAD--LENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIMAKY 840
            +GF+ TIPHKE  +   DE+D  +K++GAVN +  +  DGK  GYNTD +G ++ +       ED     L  +GG S  LA +L   +                  ++ +ANR+ DR       V   +L  A+  L  F+     I+ NTT  GM     E  I    L  + LV D VY P  T +L  AE  G  I +GL+MF+ Q  E Y  +TG     ++ +  + KY
Sbjct:   55 SGFNVTIPHKERIIPYLDEIDEQSKTVGAVNTV--KIVDGKWIGYNTDGIGYVTGLRQVYPDLEDAYILILG-AGGASKGLANELKKFVRP----------------KLTVANRSMDRFESWQLEVNKISLQEAEAALSEFD-----IIINTTPAGMNQN-KEVIINLDNLDSHTLVSDIVYVPFKTPILEIAEAKGNPIHNGLDMFVYQGAESYRIWTGELPQIQIMKDTVLKY 264          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_CLOPS (Shikimate dehydrogenase OS=Clostridium perfringens (strain SM101 / Type A) GN=aroE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.571e-18
Identity = 62/227 (27.31%), Postives = 106/227 (46.70%), Query Frame = -2
Query:  157 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQKIMAKY*C 837
            G + TIP+KE  +   D +   AK+IGAVN I+ +  DGK +GYNTDY G    +E   R ++++ G          FV+                   ++V+ +R  ++  +  +    + +S  +LE  + E  +I  NTT  GM P  +   + +  +  + +  D VY P  T+ L+ A+++G   V GL M +GQ  +  E + G+   K   + I  +  C
Sbjct:   57 GANVTIPYKEKVMNQLDIISHEAKAIGAVNTILIK--DGKSYGYNTDYYGFGKMLE---RAKVDIEGN-------SFFVLGAGGAARSILKYLEDSKAKKIVLVSRDKEKVFKKFKDFNINFMSYGELEEIHEEFALI--NTTPCGMYPNTNSVAVSEKVIKKFKVALDIVYNPLETKFLKMAKDNGLKTVDGLFMLVGQGVKAEEIWNGIKVDKSTEENIYEELKC 269          
The following BLAST results are available for this feature:
BLAST of CN191732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
AROE_DESRM5.509e-1928.69Shikimate dehydrogenase OS=Desulfotomaculum reduce... [more]
AROE_MACCJ1.227e-1830.04Shikimate dehydrogenase OS=Macrococcus caseolyticu... [more]
AROE_METBU1.603e-1833.78Shikimate dehydrogenase OS=Methanococcoides burton... [more]
AROE_AZOC51.603e-1831.74Shikimate dehydrogenase OS=Azorhizobium caulinodan... [more]
AROE_THET22.094e-1833.94Shikimate dehydrogenase OS=Thermus thermophilus (s... [more]
AROE_SYMTH2.094e-1832.48Shikimate dehydrogenase OS=Symbiobacterium thermop... [more]
AROE_DEHSB2.734e-1831.47Shikimate dehydrogenase OS=Dehalococcoides sp. (st... [more]
AROE_BACSU2.734e-1831.34Shikimate dehydrogenase OS=Bacillus subtilis GN=ar... [more]
AROE_STAS13.571e-1832.34Shikimate dehydrogenase OS=Staphylococcus saprophy... [more]
AROE_CLOPS3.571e-1827.31Shikimate dehydrogenase OS=Clostridium perfringens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005L14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191732 ID=CN191732; Name=CN191732; organism=Citrus sinensis; type=EST; length=880bp
CTAAGAAATTTAGGATTTTATTTCCATACATAAANATTGAGGTACAAGTA
GACCTTTTATATTTTTGTCAGAAGAAAAAAATGAACAACGATGCTTCATG
TTGAATTACGCTAGAAAACAAAATCAGCAACATGTAATGGATTGACCAAA
CAGACCACACTAGTACTTTGCCATGATTTTCTGAAATAGTTCCTTCGGCG
CAGGCAATCCAGTGAATCTTTCATACTGTTCATATGCCTGTCCAATGAAC
ATCTCCAGCCCTGACACAATTGTGGCTCCAGATTCCTCTGCTTCTCTCAA
GAGTCTGGTAATTTTCGGGGTGTAAACAGCATCAAAGACCAGCGCATAAT
GTCCCAAAGCATGCTTCGGAATAGGTGTTTCATCAACTTTTGGCTGCATT
CCAATGGACGTTGTGTTTGCAAGAATCATGCCATCCTCCGGATTAAAATT
TTCCAGGTCGGCAAGAGATAAAGCATGTCCTCCTACAGTCTCTGCAAGTT
CTCTGGCTCGATCATAAGTGCGATTGGCAATCACAACCCTTGCTCCCTTT
GCTTTTGCACCATAAGCAAGTGCCTTGCCAGCACCACCAGCTCCAATGAC
CACAAATAACTTACCTGCTAATGCTGAGCTGACCCCACCACTGACATTAA
GTCTACCTCTTAGTCCATCCTCAATAGCAGAAATAGCACCAACATAGTCT
GTATTGTAACCAAATAACTTCCCATCACTTTGTCTTCTTATGATACAATT
AACAGCTCCTATTGACTTGGCAACTGTATCAACCTCATCACAACACTTCA
CTGCTGCCTCTTTGTGAGGAATTGTGCAACTGAATCCGGCAAAATCGTTG
GACGAATAAGTCTGGAAAAATTTTGCAATG
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