CN191732

Overview
NameCN191732
Unique NameCN191732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_STAAB (Shikimate dehydrogenase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=aroE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18
Identity = 72/225 (32.00%), Postives = 107/225 (47.56%), Query Frame = -2
Query:  199 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV------SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPA 855
            S  +  GF+ TIPHKE  +   D VD  A + GAVN ++ +  DGK  GYNTD +G +  +        N       +GG S  +A +L   +                  ++ +ANRT   AR  +  +  + +SLAD EN+  E  +++ NTT  GM    +     KH L    L+ D +Y P  T +L EAE  G  I +GL+MF+ Q  E ++ +T   A
Sbjct:   50 SKKELDGFNITIPHKERIIPYLDYVDEQAINAGAVNTVLIK--DGKWIGYNTDGIGYVKGLHSVYPDLENAYILILGAGGASKGIAYELAKFLKL----------------KLTVANRTM--ARFESWNLNINQISLADAENYLAEFDIVI-NTTPAGMAGNNESIINLKH-LSPNTLMSDIIYIPYKTPILEEAERKGNHIYNGLDMFVYQGAESFKIWTNKDA 252          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_STAAR (Shikimate dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=aroE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.039e-17
Identity = 72/225 (32.00%), Postives = 106/225 (47.11%), Query Frame = -2
Query:  199 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV------SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPA 855
            S  +  GF+ TIPHKE  +   D VD  A + GAVN ++ +  DGK  GYNTD +G +  +        N       +GG S  +A +L   +                  ++ +ANRT   AR  +  +  + +SLAD E +  E  +++ NTT  GM    +     KH L    L+ D VY P  T +L EAE  G  I +GL+MF+ Q  E ++ +T   A
Sbjct:   50 SKKELDGFNITIPHKERIIPYLDHVDEQAINAGAVNTVLIK--DGKWIGYNTDGIGYVKGLHSVYPDLENAYILILGAGGASKGIAYELAKFVKP----------------KLTVANRTM--ARFESWNLNINQISLADAEKYLAEFDIVI-NTTPAGMAGNNESIINLKH-LSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQGAESFKIWTNKDA 252          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_METM7 (Shikimate dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=aroE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.039e-17
Identity = 74/228 (32.46%), Postives = 111/228 (48.68%), Query Frame = -2
Query:  205 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED--GLRGRLNV----SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAE----------TVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETP-IPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGL 837
            GF+ TIPHK   +K  DE+D  AK+IGAVN +  +  +GK  GYNTD +GA   +E+  G+    N+    SGG S A+  +L                       + I NR  ++A+ L+E           +    L L D++NF+     I+ NTT +GM P  +  P IP   +   A+V D +Y P     L+EA + GA  ++GL M + Q    +E +TG+
Sbjct:   62 GFNVTIPHKINIMKYLDEIDEDAKAIGAVNTV--KIENGKAIGYNTDGIGAKRTLEEKAGILIDKNILIIGSGGASRAVCFEL------------------AKDNNLTIINRNIEKAKILSEEFSKKLKKQKPINYGDLDL-DIKNFD-----IILNTTPVGMHPNTNVDPVIPLKNIKKDAVVMDLIYNPIEPVFLKEAIKYGAKTINGLGMLVYQGAVSFEIWTGM 263          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_DICTD (Shikimate dehydrogenase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=aroE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.039e-17
Identity = 70/226 (30.97%), Postives = 107/226 (47.35%), Query Frame = -2
Query:  178 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGH------ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPKELFQK 837
            G + TIPHKE+ ++  DE+  ++  +GAVN + R     K  G NTD+ G +  +ED     LN+S   S  + G                         V + NRTY+RA ++A  V  +       +   D E  + +  +IL NTTSIG+  K  ETP           V+D +Y PK T LL+ A+E+     +GL+M I QA   +E++ G   P E+ ++
Sbjct:   62 GLNVTIPHKESIIEFLDEISEISNILGAVNTVYRENHKWK--GDNTDFGGFLKTLED-----LNLSSDFSCLILGA------GGAARAVIYAVLEYGFKEVYLTNRTYERAEKIAVEVKKNKNFEIKVIPWEDREKISEK--VILINTTSIGLDGK--ETPW-NGDFKKLVFVYDIIYNPKETPLLKLAKENNVPYKNGLDMLIYQACLSWEKWFGFVGPFEVMKR 269          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_SYNFM (Shikimate dehydrogenase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=aroE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17
Identity = 68/230 (29.57%), Postives = 107/230 (46.52%), Query Frame = -2
Query:  193 QTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE-----DGLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGM-ILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPAPK 864
            +T +   F G S T+PHKE A +  D VD +A++IGAVN ++R  S     G NTD++GA  A+      +G    +  +GG + A+A                        ARV IANR  ++ + LA++     + LA L+    +    ++   TS+G+Q  +    +         +V + VY P  T  L  A+ +GATIV G +M + Q   Q E +   P P+
Sbjct:   52 ETLARFGFRGLSVTLPHKELAYRLADHVDDMARTIGAVNTLMREGS--AWIGCNTDWLGATKALRRVTELEGREALILGAGGAARAVA-----------------FGMKREGARVTIANRCVEKGKALAKSFRCDFIPLAILDRARFDRHFDVVVQCTSVGLQGTIPTVLVSDSFFEPGMVVMETVYRPLRTPFLNAAKRAGATIVHGTDMLVYQGVAQLEWWLSRPIPE 262          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_STAAT (Shikimate dehydrogenase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=aroE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17
Identity = 72/225 (32.00%), Postives = 106/225 (47.11%), Query Frame = -2
Query:  199 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV------SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPA 855
            S  +  GF+ TIPHKE  +   D VD  A + GAVN ++ +  DGK  GYNTD +G +  +        N       +GG S  +A +L   +                  ++ +ANRT   AR  +  +  + +SLAD E +  E  +++ NTT  GM    +     KH L    L+ D VY P  T +L EAE  G  I +GL+MF+ Q  E ++ +T   A
Sbjct:   50 SKKELEGFNITIPHKERIIPYLDYVDEQAINAGAVNTVLIK--DGKWIGYNTDGIGYVKGLHSVYPDLENAYILILGAGGASKGIAYELAKFVKP----------------KLTVANRTM--ARFESWNLNINQISLADAEKYLAEFDIVI-NTTPAGMAGNNESIINLKH-LSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQGAESFKIWTNKDA 252          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_STAAE (Shikimate dehydrogenase OS=Staphylococcus aureus (strain Newman) GN=aroE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17
Identity = 72/225 (32.00%), Postives = 106/225 (47.11%), Query Frame = -2
Query:  199 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV------SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPA 855
            S  +  GF+ TIPHKE  +   D VD  A + GAVN ++ +  DGK  GYNTD +G +  +        N       +GG S  +A +L   +                  ++ +ANRT   AR  +  +  + +SLAD E +  E  +++ NTT  GM    +     KH L    L+ D VY P  T +L EAE  G  I +GL+MF+ Q  E ++ +T   A
Sbjct:   50 SKKELEGFNITIPHKERIIPYLDYVDEQAINAGAVNTVLIK--DGKWIGYNTDGIGYVKGLHSVYPDLENAYILILGAGGASKGIAYELAKFVKP----------------KLTVANRTM--ARFESWNLNINQISLADAEKYLAEFDIVI-NTTPAGMAGNNESIINLKH-LSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQGAESFKIWTNKDA 252          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_STAAC (Shikimate dehydrogenase OS=Staphylococcus aureus (strain COL) GN=aroE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17
Identity = 72/225 (32.00%), Postives = 106/225 (47.11%), Query Frame = -2
Query:  199 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV------SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPA 855
            S  +  GF+ TIPHKE  +   D VD  A + GAVN ++ +  DGK  GYNTD +G +  +        N       +GG S  +A +L   +                  ++ +ANRT   AR  +  +  + +SLAD E +  E  +++ NTT  GM    +     KH L    L+ D VY P  T +L EAE  G  I +GL+MF+ Q  E ++ +T   A
Sbjct:   50 SKKELEGFNITIPHKERIIPYLDYVDEQAINAGAVNTVLIK--DGKWIGYNTDGIGYVKGLHSVYPDLENAYILILGAGGASKGIAYELAKFVKP----------------KLTVANRTM--ARFESWNLNINQISLADAEKYLAEFDIVI-NTTPAGMAGNNESIINLKH-LSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQGAESFKIWTNKDA 252          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_STAA8 (Shikimate dehydrogenase OS=Staphylococcus aureus (strain NCTC 8325) GN=aroE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17
Identity = 72/225 (32.00%), Postives = 106/225 (47.11%), Query Frame = -2
Query:  199 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV------SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPA 855
            S  +  GF+ TIPHKE  +   D VD  A + GAVN ++ +  DGK  GYNTD +G +  +        N       +GG S  +A +L   +                  ++ +ANRT   AR  +  +  + +SLAD E +  E  +++ NTT  GM    +     KH L    L+ D VY P  T +L EAE  G  I +GL+MF+ Q  E ++ +T   A
Sbjct:   50 SKKELEGFNITIPHKERIIPYLDYVDEQAINAGAVNTVLIK--DGKWIGYNTDGIGYVKGLHSVYPDLENAYILILGAGGASKGIAYELAKFVKP----------------KLTVANRTM--ARFESWNLNINQISLADAEKYLAEFDIVI-NTTPAGMAGNNESIINLKH-LSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQGAESFKIWTNKDA 252          
BLAST of CN191732 vs. ExPASy Swiss-Prot
Match: AROE_STAA3 (Shikimate dehydrogenase OS=Staphylococcus aureus (strain USA300) GN=aroE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17
Identity = 72/225 (32.00%), Postives = 106/225 (47.11%), Query Frame = -2
Query:  199 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV------SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLPA 855
            S  +  GF+ TIPHKE  +   D VD  A + GAVN ++ +  DGK  GYNTD +G +  +        N       +GG S  +A +L   +                  ++ +ANRT   AR  +  +  + +SLAD E +  E  +++ NTT  GM    +     KH L    L+ D VY P  T +L EAE  G  I +GL+MF+ Q  E ++ +T   A
Sbjct:   50 SKKELEGFNITIPHKERIIPYLDYVDEQAINAGAVNTVLIK--DGKWIGYNTDGIGYVKGLHSVYPDLENAYILILGAGGASKGIAYELAKFVKP----------------KLTVANRTM--ARFESWNLNINQISLADAEKYLAEFDIVI-NTTPAGMAGNNESIINLKH-LSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQGAESFKIWTNKDA 252          
The following BLAST results are available for this feature:
BLAST of CN191732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
AROE_STAAB6.091e-1832.00Shikimate dehydrogenase OS=Staphylococcus aureus (... [more]
AROE_STAAR1.039e-1732.00Shikimate dehydrogenase OS=Staphylococcus aureus (... [more]
AROE_METM71.039e-1732.46Shikimate dehydrogenase OS=Methanococcus maripalud... [more]
AROE_DICTD1.039e-1730.97Shikimate dehydrogenase OS=Dictyoglomus turgidum (... [more]
AROE_SYNFM1.357e-1729.57Shikimate dehydrogenase OS=Syntrophobacter fumarox... [more]
AROE_STAAT1.357e-1732.00Shikimate dehydrogenase OS=Staphylococcus aureus (... [more]
AROE_STAAE1.357e-1732.00Shikimate dehydrogenase OS=Staphylococcus aureus (... [more]
AROE_STAAC1.357e-1732.00Shikimate dehydrogenase OS=Staphylococcus aureus (... [more]
AROE_STAA81.357e-1732.00Shikimate dehydrogenase OS=Staphylococcus aureus (... [more]
AROE_STAA31.357e-1732.00Shikimate dehydrogenase OS=Staphylococcus aureus (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0005L14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0005L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN191732 ID=CN191732; Name=CN191732; organism=Citrus sinensis; type=EST; length=880bp
CTAAGAAATTTAGGATTTTATTTCCATACATAAANATTGAGGTACAAGTA
GACCTTTTATATTTTTGTCAGAAGAAAAAAATGAACAACGATGCTTCATG
TTGAATTACGCTAGAAAACAAAATCAGCAACATGTAATGGATTGACCAAA
CAGACCACACTAGTACTTTGCCATGATTTTCTGAAATAGTTCCTTCGGCG
CAGGCAATCCAGTGAATCTTTCATACTGTTCATATGCCTGTCCAATGAAC
ATCTCCAGCCCTGACACAATTGTGGCTCCAGATTCCTCTGCTTCTCTCAA
GAGTCTGGTAATTTTCGGGGTGTAAACAGCATCAAAGACCAGCGCATAAT
GTCCCAAAGCATGCTTCGGAATAGGTGTTTCATCAACTTTTGGCTGCATT
CCAATGGACGTTGTGTTTGCAAGAATCATGCCATCCTCCGGATTAAAATT
TTCCAGGTCGGCAAGAGATAAAGCATGTCCTCCTACAGTCTCTGCAAGTT
CTCTGGCTCGATCATAAGTGCGATTGGCAATCACAACCCTTGCTCCCTTT
GCTTTTGCACCATAAGCAAGTGCCTTGCCAGCACCACCAGCTCCAATGAC
CACAAATAACTTACCTGCTAATGCTGAGCTGACCCCACCACTGACATTAA
GTCTACCTCTTAGTCCATCCTCAATAGCAGAAATAGCACCAACATAGTCT
GTATTGTAACCAAATAACTTCCCATCACTTTGTCTTCTTATGATACAATT
AACAGCTCCTATTGACTTGGCAACTGTATCAACCTCATCACAACACTTCA
CTGCTGCCTCTTTGTGAGGAATTGTGCAACTGAATCCGGCAAAATCGTTG
GACGAATAAGTCTGGAAAAATTTTGCAATG
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